cluster # 3482

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Anopheles gambiae
cluster # 3482 cluster # 3482 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3482#0 length = 1123 sequences # 2

consensus_3482#1 length = 272 sequences # 1

consensusID : consensus_3482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1123
fasta sequence

                              [CCGCAGACCAACTTCGCCAGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAAAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGCAACGTTCCAGTAGTAGAAGTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACCAGCCAGCGCTCGCCGGGTGCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGCTCAAGTTTATCTACGTGCCGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCCAGTGCATCATCGAGGGCTACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGCTCGCACCCTCGCGCACCATTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTGAAGCGGAACAGCGAGCCGGCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTATTCGCCCCAGGTCGGCGAGTACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCGGCCGTGCGCTGCTTTCACAACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGCGTCAGCCAGCGCAACGTGTCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACGTACACGTGCGTGCTGGAAACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGACGTGCAGGACCCGAAGTGGTCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGCTGCCGAAGGTGATCACCCGTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCAGTGTGCCGAGCTTGGTCAAGTGGTTCGTGGAAAAAAAATGGCC]

[+] EMBL BM640392             [CCGCAGACCAACTTCGCCAGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAAAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGCAACGTTCCAGTAGTAGAAGTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACCAGCCAGCGCTCGCCGGGTGCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGCTCAAGTTTATCTACGTGCCGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCCAGTGCATCATCGAGGGCTACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGCTCGCACCCTCGCGCACCATTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTGAAGCGGAACAGCGAGCCGGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM588614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAAT CGGGTGAAGCGGAACAGCGAGCCGGCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTATTCGCCCCAGGTCGGCGAGTACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCGGCCGTGCGCTGCTTTCACAACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGCGTCAGCCAGCGCAACGTGTCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACGTACACGTGCGTGCTGGAAACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGACGTGCAGGACCCGAAGTGGTCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGCTGCCGAAGGTGATCACCCGTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCAGTGTGCCGAGCTTGGTCAAGTGGTTCGTGGAAAAAAAATGGCC]




>consensus_3482#0
CCGCAGACCAACTTCGCCAGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATG
CTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGC
TCAACTTGAGAAAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCG
GTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGC
AACGTTCCAGTAGTAGAAGTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACC
AGCCAGCGCTCGCCGGGTGCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGC
TCAAGTTTATCTACGTGCCGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCC
AGTGCATCATCGAGGGCTACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGC
TCGCACCCTCGCGCACCATTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCC
AGTGCGTGAGCGCGAAGGATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCC
GGGTGGAGCGCACGATCGAGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTG
AAGCGGAACAGCGAGCCGGCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTAT
TCGCCCCAGGTCGGCGAGTACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCG
GCCGTGCGCTGCTTTCACAACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGC
GTCAGCCAGCGCAACGTGTCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACG
TACACGTGCGTGCTGGAAACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGAC
GTGCAGGACCCGAAGTGGTCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGC
TGCCGAAGGTGATCACCCGTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCA
GTGTGCCGAGCTTGGTCAAGTGGTTCGTGGAAAAAAAATGGCC

consensusID : consensus_3482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGGAAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA]

[+] EMBL AGA281887            [AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGGAAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGTCAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTGGAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGATGTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA]




>consensus_3482#1
AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGG
AAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGT
CAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTG
GAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGAT
GTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3482#0      ------------------------------------------CCGCAGACCAACTTCGCC 18
consensus_3482#1      AAGCCTCCGTGAGTCAGTACGGGCACACCTTGACGCCCTTTGGCAAAGTGAAGCAGCAGG 60
                                                                 *  **   * *  *   

consensus_3482#0      AGATGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGT 78
consensus_3482#1      AAACGCAACGCAATGCAGTAGTATGGTGGTCCCGAAGTAATGCTGTGTACGTGACTGTGT 120
                      * * ********************************************************

consensus_3482#0      CAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAAAGGGTG 138
consensus_3482#1      CAGTGAATCATCGTCAACGCATCTAATAGCAAACTGATGAGCTCAACTTGAGAGAGGGTG 180
                      ***************************************************** ******

consensus_3482#0      GAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGAT 198
consensus_3482#1      GAGTGAAGTGTCACACGCGGCGGAATTCCTTAGCGAACGTCGGTGCTGTGCTCCGTGGAT 240
                      ************************************************************

consensus_3482#0      GTTTCAAGCTCAGTGTTAATGTGTGTGTTTGAAGTTGATAGCAACGTTCCAGTAGTAGAA 258
consensus_3482#1      GTTTCAAGCTCAGTGTTAATGTGTGTGTTTGA---------------------------- 272
                      ********************************                            

consensus_3482#0      GTAGAAGAATTCGATGCGAAATGGCCAGTGGTGCGATCAACCAGCCAGCGCTCGCCGGGT 318
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      GCGGTCGGGCAGCCGCCGGTGAACCGTGCGCCACCGTGCCGCTCAAGTTTATCTACGTGC 378
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      CGCAGAAGCTCGAGGTGTACGAGTACGAGACGGCCATCTTCCAGTGCATCATCGAGGGCT 438
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      ACCCGACGCCGGCCATGGCCTGGCAGCGCAACGGCGCCCTGCTCGCACCCTCGCGCACCA 498
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      TTTCGATCCAGAGCAAGGGCTCCCTGTGCACGATGAAGATCCAGTGCGTGAGCGCGAAGG 558
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      ATGCCGGCCCGTACCAGCTAGTGATCGAGAACGAGAGTGGCCGGGTGGAGCGCACGATCG 618
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      AGCTGCTGGTGCTCGAGAAGATCCGCACGATCAATCCGGGTGAAGCGGAACAGCGAGCCG 678
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      GCGGCGAGCAGTATGCGCATCTACCGCCACATCAACGACTATTCGCCCCAGGTCGGCGAG 738
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      TACATCGTGCTGAACGCGGAGTACTACGCACCGTCCATACCGGCCGTGCGCTGCTTTCAC 798
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      AACGGGCGCGAGCTGGACGATGGCCGGATATTCCATCGCAGCGTCAGCCAGCGCAACGTG 858
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      TCGCTCGTGCTGGAGAAGGCGAAGGCGAGCGATTCCGGCACGTACACGTGCGTGCTGGAA 918
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      ACGATCGACGGCTGCATGAAGGTGATGTCGGCGGAGATCGACGTGCAGGACCCGAAGTGG 978
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      TCGGGTACCGGTCGGGCAGCTTACCCCGGATTGTGCACGAGCTGCCGAAGGTGATCACCC 1038
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      GTCACGGAGGGGAACCGAGGTGGAGCTCAGCCTGGAGCTGCAGTGTGCCGAGCTTGGTCA 1098
consensus_3482#1      ------------------------------------------------------------
                                                                                  

consensus_3482#0      AGTGGTTCGTGGAAAAAAAATGGCC 1123
consensus_3482#1      -------------------------