cluster # 3485

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3485 cluster # 3485 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3485#0 length = 744 sequences # 2

consensus_3485#1 length = 512 sequences # 1

consensusID : consensus_3485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 744
fasta sequence

                              [GTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCATGCTCATCACCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACACCCATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAAAAACAAAAGAGAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAACTGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAACGAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGNTTGATCAGACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGTTTTGTTACGTTTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTGATTCGTTTATCATTTCGTTTAGTT]

[+] EMBL BX627820             [GTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCATGCTCATCACCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACACCCATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAAAAACAAAAGAGAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAACTGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAACGAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGNTTGATCAG                                                                                                                                      ]
[+] EMBL AGA282028            [                                                                                                                                                                                                                                                                                                                                                                                                              AGGGAAGAGATAGAGAGGACACTGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATG TGATAAATCGAGAAATGCAAACGAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGTTTGATCAGACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGTTTTGTTACGTTTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTGATTCGTTTATCATTTCGTTTAGTT]




>consensus_3485#0
GTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCC
ATGCTCATCACCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCC
CGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACAC
CCATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAAC
AGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTT
TGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAA
AAACAAAAGAGAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAAC
TGTGTCAAAAAAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGT
GTGGGATTTATCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAAC
GAACGAAGCATGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATC
GNTTGATCAGACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGT
TTTGTTACGTTTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTG
ATTCGTTTATCATTTCGTTTAGTT

consensusID : consensus_3485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAGTTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGAATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCACCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACC]

[+] EMBL BM579157             [CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAGTTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGAATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTAAAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCACCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCCACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACC]




>consensus_3485#1
CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAG
TTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGA
ATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTA
AAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCA
CCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCC
ACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACACACTGACACACACGA
GATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGCCGCTAGTTGAATGTGA
TTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTTTTGCTATTATTATATG
TGTATGTGTTCCAATTTCTGGCCAATTAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3485#0      ------------------------------------------------------------
consensus_3485#1      CTGATTGGTCGAATAGTTCTGTTTTACACTTCAGTCTACATCCCCCTCCCTTTGCTTAAG 60
                                                                                  

consensus_3485#0      ------------------------------------------------------------
consensus_3485#1      TTGTTGCATTTAGGTGTCGTTGAGATAGAACGTGCAGAGCGCAGATGGGCAGACACGGGA 120
                                                                                  

consensus_3485#0      --------------------------------------------------GTGTGAATTA 10
consensus_3485#1      ATGGGCAGATTTTTACGTGCATGAATATTAAGGTAATAATATACATCGGACTGTGAATTA 180
                                                                         *********

consensus_3485#0      AAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCATGCTCATCA 70
consensus_3485#1      AAAGAAACATAAAACAAGAAAGCAATCACTGAACTCAGACCAGCAGGCCCAGGCTCATCA 240
                      *************************************************** ********

consensus_3485#0      CCACGGACAGCCATAATAGTGCGTAAGAGGGCTGATTTATGTTGATCGCCCGTCAGGGCC 130
consensus_3485#1      CCACGGACAGCCATAATAGTGCGTAAGGGGGCTGATTTATGTTGATCGCCCGTCAGGGCC 300
                      *************************** ********************************

consensus_3485#0      ACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATACACACCCACACCCATACACAC 190
consensus_3485#1      ACGATTCCTGCGCCTCCCGTAAATGAATTGAAAACAATAC----------------ACAC 344
                      ****************************************                ****

consensus_3485#0      ACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGC 250
consensus_3485#1      ACACTGACACACACGAGATTCGCTTTTCATATCATGATTTTGTGTCAAACAGTTGACAGC 404
                      ************************************************************

consensus_3485#0      CGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTT 310
consensus_3485#1      CGCTAGTTGAATGTGATTATTACCATCGAGGGAGCGTGCGAGGAAGTCTTTGAAATGGTT 464
                      ************************************************************

consensus_3485#0      TTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACCAAAAACAAAAGA 370
consensus_3485#1      TTGCTATTATTATATGTGTATGTGTTCCAATTTCTGGCCAATTAAACC------------ 512
                      ************************************************            

consensus_3485#0      GAGAAGAAAAGAAAACAAACGCACGATCAGGGAAGAGATAGAGAGGAAACTGTGTCAAAA 430
consensus_3485#1      ------------------------------------------------------------
                                                                                  

consensus_3485#0      AAGAAAAGGAAATCCCACGGGAACTACACCAAGCAGCAGCTGTGTTATGTGTGGGATTTA 490
consensus_3485#1      ------------------------------------------------------------
                                                                                  

consensus_3485#0      TCCTTCCCGTTTTCACCCAAGTTGATGTTGATAAATCGAGAAATGCAAACGAACGAAGCA 550
consensus_3485#1      ------------------------------------------------------------
                                                                                  

consensus_3485#0      TGGTATCGTTTTTTAAGAACATTTCCCAACTGCTGCACTCACTTGTGATCGNTTGATCAG 610
consensus_3485#1      ------------------------------------------------------------
                                                                                  

consensus_3485#0      ACCCAAAAGATGCGTGTATAATAATCGGGTCGTGCGGGGTAGTATGTGGTTTTGTTACGT 670
consensus_3485#1      ------------------------------------------------------------
                                                                                  

consensus_3485#0      TTTTTTTTCTCCCCCTCCCCCCGCTTATGTCTCGTTACGTTATTATTTTGATTCGTTTAT 730
consensus_3485#1      ------------------------------------------------------------
                                                                                  

consensus_3485#0      CATTTCGTTTAGTT 744
consensus_3485#1      --------------