cluster # 3486

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3486 cluster # 3486 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3486#0 length = 642 sequences # 1

consensus_3486#1 length = 628 sequences # 1
consensus_3486#2 length = 381 sequences # 1

consensusID : consensus_3486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTGGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTCTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACATAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTTGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCACAATGGCAAAAAAAAACTGATGAATAAATTACATTCTTAGGCGCTTGCTATTATGATGGTTTAATGGACCATCATCAAGTGG]

[+] EMBL BM596595             [CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTGGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTCTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACATAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTTGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCACAATGGCAAAAAAAAACTGATGAATAAATTACATTCTTAGGCGCTTGCTATTATGATGGTTTAATGGACCATCATCAAGTGG]




>consensus_3486#0
CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAGTGCTG
GCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCC
TCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCC
CTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTC
TTTCCGGAGGTTTCCTTCTGTCTGGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGT
GTCTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACATAAATAAAATC
TCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAA
AAGTGAAACTGTCCATTTGGAGTTTGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAA
TTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCT
ATTCGTCAGGTCAGTACTCACAATGGCAAAAAAAAACTGATGAATAAATTACATTCTTAG
GCGCTTGCTATTATGATGGTTTAATGGACCATCATCAAGTGG

consensusID : consensus_3486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [ATCCCCCGAGGTTAAGCCGGGCGCTGATAAATGGCTGTATNGACCTCTGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGGTGCATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAACGAACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTACCATCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATACTGATGAATAAATTACATTCTTAGGCCGCTTG]

[+] EMBL AL694113             [ATCCCCCGAGGTTAAGCCGGGCGCTGATAAATGGCTGTATNGACCTCTGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGGTGCATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAACGAACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTACCATCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATACTGATGAATAAATTACATTCTTAGGCCGCTTG]




>consensus_3486#1
ATCCCCCGAGGTTAAGCCGGGCGCTGATAAATGGCTGTATNGACCTCTGTTTCGCTAGTG
CTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTG
GCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTT
TCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAG
TTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGGTG
CATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCCTGTACTACGTAAA
TAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAACGA
ACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTACCA
TCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTAACA
AACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATACTGA
TGAATAAATTACATTCTTAGGCCGCTTG

consensusID : consensus_3486#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [CAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTCGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTTTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTGGAGTGGTGGTGGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAAAAAACTGATGAATAAATTACATTCT]

[-] EMBL AGA282033            [CAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTCGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTTTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTGGAGTGGTGGTGGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAAAAAACTGATGAATAAATTACATTCT]




>consensus_3486#2
CAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTCGGCATCGCGCTGTTCGCCTGTGGA
ATGGTGCATCGTGTTTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTAC
GTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGC
AAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTGGAGTGGTGGTGGTGGTGGTGTCC
ATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAA
ACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAAAAAA
CTGATGAATAAATTACATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3486#0      -----CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAG 55
consensus_3486#2      ------------------------------------------------------------
consensus_3486#1      ATCCCCCGAGGTTAAGCCGGGCGCT-GATAAA-TGGCTGTATNGACCTCTGTTTCGCTAG 58
                                                                                  

consensus_3486#0      TGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGT 115
consensus_3486#2      ------------------------------------------------------------
consensus_3486#1      TGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGT 118
                                                                                  

consensus_3486#0      TGGCCTCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCC 175
consensus_3486#2      ------------------------------------------------------------
consensus_3486#1      TGGCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCC 178
                                                                                  

consensus_3486#0      TTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCA 235
consensus_3486#2      -----------------------------------------------------CAGGCCA 7
consensus_3486#1      TTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCA 238
                                                                           *******

consensus_3486#0      AGTTCTTTCCGGAGGTTTCCTTCTGTCT-GGGCATCGCGCTGTT--CGCCTGTGGAATGG 292
consensus_3486#2      AGTTCTTTCCGGAGGTTTCCTTCTGTCT-CGGCATCGCGCTGTT--CGCCTGTGGAATGG 64
consensus_3486#1      AGTTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGG 298
                      ****************************  ***** *****  *  **************

consensus_3486#0      TGCATCGTGTCT-GTGTGACCTCTTGCATATTGTT-CTCCGTCGCCGCCCTGTACTACAT 350
consensus_3486#2      TGCATCGTGTTT-GTGTGACCTCTTGCATATTGTT-CTCCGTCGCCGCCCTGTACTACGT 122
consensus_3486#1      TGCATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCC-TGTACTACGT 357
                      ********** * ********************** ************* ******** *

consensus_3486#0      AAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAA 410
consensus_3486#2      AAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAA 182
consensus_3486#1      AAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAA 417
                      ************************************************************

consensus_3486#0      GAA--GAAGAAAAAGTGAAACTGTCCATTTGGA-GTTTG-----------TGGTGGTGT- 455
consensus_3486#2      GAA--GAAGAAAAAGTGAAACTGTCCATTTGGA-GTTGGAGTGGTGGTGGTGGTGGTGT- 238
consensus_3486#1      CGAACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTA 477
                        *  **************************** **              ********* 

consensus_3486#0      CCATCATGCGAGGGTCGCAATGCAATTT--TGGATTTTCATCACTTAGCTGTAAGAACTA 513
consensus_3486#2      CCATCATGCGAGGGTCGCAATGCAATTT--TGGATTTTCATCACTTAGCTGTAAGAACTA 296
consensus_3486#1      CCATCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTA 537
                      **************** ******** **  ****** ***********************

consensus_3486#0      ACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCACAATGGCAAAAAA 573
consensus_3486#2      ACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAA 356
consensus_3486#1      ACAAACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATA- 596
                      ********************************** *********** *** ****** * 

consensus_3486#0      AAA-CTGATGAATAAATTACATTCTTAGGC-GCTTGCTATTATGATGGTTTAATGGACCA 631
consensus_3486#2      AAAACTGATGAATAAATTACATTCT----------------------------------- 381
consensus_3486#1      ----CTGATGAATAAATTACATTCTTAGGCCGCTTG------------------------ 628
                          *********************                                   

consensus_3486#0      TCATCAAGTGG 642
consensus_3486#2      -----------
consensus_3486#1      -----------