cluster # 3491

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Anopheles gambiae
cluster # 3491 cluster # 3491 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3491#0 length = 889 sequences # 2

consensus_3491#1 length = 325 sequences # 1

consensusID : consensus_3491#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 889
fasta sequence

                              [TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTGGTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGGGGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGAGCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAATAGCAACATAAACGACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGTTTGATGTGTGAGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAACGGGGAAGGAAAGAAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCGTTAAGAAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATTTCACACACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTGGTGGGTGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAAAAGCAAACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACACTGTGACAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA]

[+] EMBL CNS09AXQ             [TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTGGTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGGGGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGAGCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAATAGCAACATAAACGACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGTTTGATGTGTGAGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAACGGGGAAGGAAAGAAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCGTTAAGAAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATTTCACACACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTGGTGGGTGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAAAAGCAAACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACACTGTGACAATTAGTACATGTATAT                               ]
[-] EMBL CNS09AXR             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGAAAACTATTTTAATCGTTAGGCATCACACTGTGACAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA]




>consensus_3491#0
TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTG
GTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGG
GGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGA
GCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAAT
AGCAACATAAACGACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGTTTGATGTGTGA
GAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACA
CAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGA
AACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGGCGAC
ACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAACGGGGAAGGAAAG
AAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCGTTAAG
AAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATTTCACA
CACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTGGTGGG
TGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAAAAGCA
AACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACACTGTGA
CAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA

consensusID : consensus_3491#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [CAGCATTTACAGTACAGAGAAAAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATGTTTGCTCACGCGGGCAGGGATGGAGGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAGACGGGGAAGGAAAGAAGTCG]

[-] EMBL AGA282209            [CAGCATTTACAGTACAGAGAAAAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATGTTTGCTCACGCGGGCAGGGATGGAGGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAGACGGGGAAGGAAAGAAGTCG]




>consensus_3491#1
CAGCATTTACAGTACAGAGAAAAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATG
TTTGCTCACGCGGGCAGGGATGGAGGAATGAACCAAACCAAACTGATTATATATCGAGGA
CGAAGAAGAAAACGAAACACTGACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAA
GGAAAAACCAAACAATAATGAAAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCC
TAGCCGGCGCCGGGCGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTC
GTCAGACGGGGAAGGAAAGAAGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3491#0      TGTAGTTCAAGCTGCGTTGGCTGGGTTTGTAGAGGGGGGAGCGAGCGATAGTGAAGTGTG 60
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      GTGATTTCCATGAATTTTTACACGAACGAAAAACGCCCGATCGGAATGATACTCGAATGG 120
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      GGTCGGGGCGAAAGAAGGGTGTGTGATGCACGGTGGTGCGATGCGGCACGGTGCAGTAGA 180
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      GCTCGTCCGATCGTCGAGGGGATCGTCGTGGGTGGGTTGGGACCGGTCGGTTACAAAAAT 240
consensus_3491#1      -------------------------------------CAGCATTTACAG--TACAGAGAA 21
                                                             * *      *  **** * * 

consensus_3491#0      AGCAACATAAACG-ACAAAAAAGGCCCACAAATGAGATGTGTGTGTGCGT---TTGATGT 296
consensus_3491#1      AAAGGTGCAATTGTATTGTGAGATCGCGCCGAAGATATGTTTGCTCACGCGGGCAGGGAT 81
                      *       **  * *     *   * * *  * ** **** **    **      *   *

consensus_3491#0      GTGAGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACT 356
consensus_3491#1      GGAGGAATGAACCAAACCAAACTGATTATATATCGAGGACGAAGAAGAAAACGAAACACT 141
                      *   ********************************************************

consensus_3491#0      GACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGA 416
consensus_3491#1      GACACAGAAAAGCCCTTTACTAATATAGTAGTTGCGGAAGGAAAAACCAAACAATAATGA 201
                      ************************************************************

consensus_3491#0      AAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCTCCTCGTGAGCCGGCGCCGGG 476
consensus_3491#1      AAGAAACATGCAATAGAGAGTCCGGTGCGCGTATTCTCCT-------AGCCGGCGCCGGG 254
                      ****************************************       *************

consensus_3491#0      CGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCA-ACGGGGAAG 535
consensus_3491#1      CGACACAGACACTCACTTCACCGTTTCAAAACTTAATATTCCCTTCGTCAGACGGGGAAG 314
                      ************************************************** *********

consensus_3491#0      GAAAGAAGTCGCGTCGGTGCGTGGAAACAAAAAAAAAGAGAAGAAAGATAATATTAGTCG 595
consensus_3491#1      GAAAGAAGTCG------------------------------------------------- 325
                      ***********                                                 

consensus_3491#0      TTAAGAAGGCAATGATGGCAACACATAACTTGCTACTACTAGCGTTTCTTTCCATGCATT 655
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      TCACACACACACGGCAGCAGAGAGCACAGTACCTTCGGTGGGTCTCCTGGCTGCCGGGTG 715
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      GTGGGTGAACAAATTAATCCACTAATAAAAGAATCCCGCCTGGTTGTGCGGGGAAAAGAA 775
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      AAGCAAACAAAAAACTACACAGAAAGGTTTGAAAACTATTTTAATCGTTAGGCATCACAC 835
consensus_3491#1      ------------------------------------------------------------
                                                                                  

consensus_3491#0      TGTGACAATTAGTACATGTATATGCAATCCATTACTAATAAAGAAAGGAGCAAA 889
consensus_3491#1      ------------------------------------------------------