cluster # 3504

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Anopheles gambiae
cluster # 3504 cluster # 3504 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3504#0 length = 554 sequences # 1

consensus_3504#1 length = 464 sequences # 2

consensusID : consensus_3504#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence

                              [GGCAGAATCGGCACNNGAGGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAAGCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCGGGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTCAGCAGACCGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAACGCCGGAAGAAGTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACCGGGTTGTTCGGTGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAAAACTGCGTTGATCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGGTATTGAGGGANTTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCCGGGCGTTGGGGTTCACGTTATCACA]

[+] EMBL BX467562             [GGCAGAATCGGCACNNGAGGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAAGCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCGGGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTCAGCAGACCGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAACGCCGGAAGAAGTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACCGGGTTGTTCGGTGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAAAACTGCGTTGATCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGGTATTGAGGGANTTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCCGGGCGTTGGGGTTCACGTTATCACA]




>consensus_3504#0
GGCAGAATCGGCACNNGAGGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAA
GCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCG
GGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTG
AAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTCAGCAGACCGGC
TCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAACGCCGGAAGAA
GTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACCGGGTTGTTCGG
TGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAAAACTGCGTTGA
TCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGGTATTGAGGGAN
TTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCCGGGCGTTGGGG
TTCACGTTATCACA

consensusID : consensus_3504#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 464
fasta sequence

                              [AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAAAAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACCACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGCTGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCAAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGATCGCTGGGACGGGGCTCAAGCCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGC-TCACGCTGGG-TAATCTCG-AAAAGGCGGGACTGCTGCGTCAGCAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTCAA]

[+] EMBL AGA282494            [AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAAAAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACCACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGCTGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCAAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGATCGCTGGGACGGGGCTCAAGCCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGC TCACGCTGGG TAATCTCG AAAAGGCGGGACTGCTGCGTCAGCAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTC  ]
[+] EMBL AGA285872            [                                          TCGATCCAGGAGCTGAAAAAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAACAGTCGCTGGCCACACACACCACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGCTGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCGGGCTCAAGCCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGCTTCACGCTGGGTTAATCTCGAAAAAGGCGGGACTGCTGCGTCAGCAGACGGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAA]




>consensus_3504#1
AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAA
AAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACC
ACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGC
TGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGAT
ATGATCGCAAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGATC
GCTGGGACGGGGCTCAAGCCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGGTG
TACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTCAG
CAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3504#0      ------------------------------------------------------------
consensus_3504#1      AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAA 60
                                                                                  

consensus_3504#0      ------------------------------------------------------------
consensus_3504#1      AAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACC 120
                                                                                  

consensus_3504#0      ------------------------------------------------------------
consensus_3504#1      ACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGC 180
                                                                                  

consensus_3504#0      -------GGCAGAATCGGCACNN----GAGGTGGACAAACCGAACAGCTTCATCGAGGAT 49
consensus_3504#1      TGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGAT 240
                              * **  ** ** *      ** ******************************

consensus_3504#0      ATGATCGCGAAGCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGAT 109
consensus_3504#1      ATGATCGCAAAG-GAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGAT 299
                      ******** *** ***************************************** *****

consensus_3504#0      CGCTGGGACCGGGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGG 169
consensus_3504#1      CGCTGGGACGGGGCTCAAG-CCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGG 358
                      ********* ********* *********** ****************************

consensus_3504#0      TGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTC 229
consensus_3504#1      TGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTC 418
                      ************************************************************

consensus_3504#0      AGCAGACCGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAA 289
consensus_3504#1      AGCAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTCAA-------------- 464
                      ******* **************************** *********              

consensus_3504#0      CGCCGGAAGAAGTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACC 349
consensus_3504#1      ------------------------------------------------------------
                                                                                  

consensus_3504#0      GGGTTGTTCGGTGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAA 409
consensus_3504#1      ------------------------------------------------------------
                                                                                  

consensus_3504#0      AACTGCGTTGATCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGG 469
consensus_3504#1      ------------------------------------------------------------
                                                                                  

consensus_3504#0      TATTGAGGGANTTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCC 529
consensus_3504#1      ------------------------------------------------------------
                                                                                  

consensus_3504#0      GGGCGTTGGGGTTCACGTTATCACA 554
consensus_3504#1      -------------------------