cluster # 3507

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Anopheles gambiae
cluster # 3507 cluster # 3507 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3507#0 length = 676 sequences # 1

consensus_3507#1 length = 635 sequences # 2

consensusID : consensus_3507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAGCACAGGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGTTCTTGGTCGATCGAATACGGTCTTTGTGTCTGTTTGCGAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAGAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGAGAGTGCGAAAAAGCGAAAGGTGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGTACATAATAACAGTGGACACAAACGATGGGTC]

[+] EMBL BM624114             [CCGATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAGCACAGGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGTTCTTGGTCGATCGAATACGGTCTTTGTGTCTGTTTGCGAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAGAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGAGAGTGCGAAAAAGCGAAAGGTGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGTACATAATAACAGTGGACACAAACGATGGGTC]




>consensus_3507#0
CCGATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAGCACA
GGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCG
CTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGT
TTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTG
GGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAGCGCC
GGTAGTGATCGTACTGTGTGTGTTCTTGGTCGATCGAATACGGTCTTTGTGTCTGTTTGC
GAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAGAGGTCCTATTA
AGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGA
TAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCC
CCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGAGAGTGCGAAAAAGC
GAAAGGTGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGTACATAATAACAGTGG
ACACAAACGATGGGTC

consensusID : consensus_3507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 635
fasta sequence

                              [CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCGCGAAAAAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC]

[+] EMBL BM581527             [CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCGCGAAAAAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC]
[+] EMBL BM612196             [       ccgGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCCCCCTTCGTGCAAGCATGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTATAAGTTGCAAATTTGCATTTAATCGTTTTGGGATACAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGTGATCGTACTGTGTGTGGTACTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCG                                        ]




>consensus_3507#1
CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGTGTATTGCACGATCAGCACAGGGCC
CCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTGTTCGCTCGAT
CGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTTTTGTTTGTCA
CCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGTTTTGGGATAG
AGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAGCGCCGGTAGT
GATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCTTTGTGTCTGT
TTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCACAAAAGGTCCT
ATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCTAATTGAGTGC
GAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGCTGATCTCGTA
ATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGAGAGCGCGAAA
AAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3507#0      CCG----ATTGTGCAGGCCGGTGCTGCGTGTATTGTACGGCAGTGGTTGTACACGATCAG 56
consensus_3507#1      CCGGAGCATTGTGCAGGCCGGTGCTGCGTGTATTGT---------GTATTGCACGATCAG 51
                      ***    *****************************         **  * *********

consensus_3507#0      CACAGGGCCCCCCTTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTG 116
consensus_3507#1      CACAGGGCCCCC-TTCGTGCAAGCAGGAAGCGCACGATCGTCGACCGCGTGCGCGCCTTG 110
                      ************ ***********************************************

consensus_3507#0      TTCGCTCGATCGACGACCGCAAACGCGAAAGAAGTGGTCGAAGAAAAGTGTTTGTTTGTT 176
consensus_3507#1      TTCGCTCGATCGACGACCACAAACGCGAAAAAAGTGGTCGAAGAAAAGTGTTTGTTTGTT 170
                      ****************** *********** *****************************

consensus_3507#0      TTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGT 236
consensus_3507#1      TTGTTTGTCACCCTCGGTTTGATCTCGCCGGTTAGAAGTTGCAAATTTGCATTTAATCGT 230
                      ************************************************************

consensus_3507#0      TTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCATCCTCGGAAGAAAGCTGGAAAG 296
consensus_3507#1      TTTGGGATAGAGTGCGAGTGTTTGCGTGCTTTCGCCCGTCGTCGGAAGAAAGCTGGAAAG 290
                      ************************************* ** *******************

consensus_3507#0      CGCCGGTAGTGATCGTACTGTGTGTG----------TTCTTGGTCGATCGAATACGGTCT 346
consensus_3507#1      CGCCGGTAGTGATCGTACTGTGTGTGGTAGTGATCGTTCTTGGTGGATCGAATACGGCCT 350
                      **************************          ******** ************ **

consensus_3507#0      TTGTGTCTGTTTGCGAAACCGCGAAAAAGGCATTGAGAGGCAGCCAACAACAAAGTTCAC 406
consensus_3507#1      TTGTGTCTGTTTGCGAAACCGCGAAAGAGGCATTGAGAGGCAGCCAACAACAAAGTTCAC 410
                      ************************** *********************************

consensus_3507#0      AAGAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCT 466
consensus_3507#1      AAAAGGTCCTATTAAGAAGAGCCTTCCCCAGAAACCGCTAACGACGCTCGGTAGGGCTCT 470
                      ** *********************************************************

consensus_3507#0      AATTGAGTGCGAGATAATTGTGCCCTTTTATCCATTGGTCCGTTCGCTGCATCTGCGTGC 526
consensus_3507#1      AATTGAGTGCGAGATAATTGTGCCCTTTTATCCGTTGGTCCGTTCGCTGCATCTGCGTGC 530
                      ********************************* **************************

consensus_3507#0      TGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTGGAGCAGTTTGAACGACAAAGA 586
consensus_3507#1      TGATCTCGTAATCCCCGTGCCGTGCTTACGTGTTTCTTAGAGCAGTTTGAACGACAAAGA 590
                      ************************************** *********************

consensus_3507#0      GAGTGCGAAAAAGCGAAAGG-TGTGTTGGTGTGCAGGTAGTGGGCAGCAGTAGCGCTGGT 645
consensus_3507#1      GAGCGCGAAAAAGCGAAAGGGTGTGTTTGTGTGCAGGTAGTGGGC--------------- 635
                      *** **************** ****** *****************               

consensus_3507#0      ACATAATAACAGTGGACACAAACGATGGGTC 676
consensus_3507#1      -------------------------------