cluster # 3515

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Anopheles gambiae
cluster # 3515 cluster # 3515 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3515#0 length = 685 sequences # 1

consensus_3515#1 length = 574 sequences # 2

consensusID : consensus_3515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTGGCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTCACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCGTACCTGGGACCCCGGCCGGCCGAGG]

[+] EMBL BM655348             [CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTGGCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTCACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCGTACCTGGGACCCCGGCCGGCCGAGG]




>consensus_3515#0
CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAA
GCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCA
GCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAA
CAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGA
CTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTC
GCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATC
GGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTC
TGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGC
GACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTG
GCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTC
ACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCG
TACCTGGGACCCCGGCCGGCCGAGG

consensusID : consensus_3515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 574
fasta sequence

                              [CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTATTTGCCGCTGCCTGCAATCACTGCCC---TGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACCAGATGATGGACAACATTAATCAGTTCC]

[+] EMBL BM581549             [CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTATTTGCCGCTGCCTGCAATCACTGCCC   TGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACCAGATGATGGACAACATTAATCAGTTCC]
[+] EMBL BX624168             [  aGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTATTTGCCGCTGCCTGCAATCACTGCCCGTATGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAAGCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCAGCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAACAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGACTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTCGCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATCGGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTCTGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGCGACTACAAGATGATGGA                 ]




>consensus_3515#1
CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTAT
TTGCCGCTGCCTGCAATCACTGCCCTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAA
GCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCA
GCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAA
CAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGA
CTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTC
GCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATC
GGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTC
TGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGC
GACTACCAGATGATGGACAACATTAATCAGTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3515#0      ------------------------------------------------------------
consensus_3515#1      CCGGCAGTTCGCAAAACCACGCCGGCCGTAAACAACAAACACACTCAGTAGTCTCAGTAT 60
                                                                                  

consensus_3515#0      CCGCAATTTTCATCCCTCACAACAGTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAA 60
consensus_3515#1      TTGCCGCTGCCTGCAATCACTGCCCTGTCGTAGTGCCTATCCAGAGTGTTGCCTGTGAAA 120
                        **   *  *  *  ****  *  ***********************************

consensus_3515#0      GCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCA 120
consensus_3515#1      GCGAGCAAAGCATTTGTGTGATCGTGTGAAGACGCCGACCACGTGCGGCACAAATTCCCA 180
                      ************************************************************

consensus_3515#0      GCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAA 180
consensus_3515#1      GCCCCAGCTCCAACCAGGTAGCGCGCCGCTGCTGCTCCATCAATCAACCCGTGCGGCAAA 240
                      ************************************************************

consensus_3515#0      CAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGA 240
consensus_3515#1      CAGCTCAGCCACCGAGTCTGAAGCGTTACGCAGAATCGCATCGCACCCTTTTGCGGCAGA 300
                      ************************************************************

consensus_3515#0      CTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTC 300
consensus_3515#1      CTCACACTACTACCGACCAGCCTAATCACCATCATGCCTGGACGTCCACTGTGGCAGGTC 360
                      ************************************************************

consensus_3515#0      GCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATC 360
consensus_3515#1      GCCGGCAAGCGGGATCGCGACCAGGAGCGCGAAGCGCAGCACTGGATCGAAACGGTGATC 420
                      ************************************************************

consensus_3515#0      GGGGAAAAGTTTCCGGTCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTC 420
consensus_3515#1      GGGGAAAAGTTTCCGGCCGGCCACGTCTACGAGGACTGCCTGCGGGATGGCATCCTGCTC 480
                      **************** *******************************************

consensus_3515#0      TGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGC 480
consensus_3515#1      TGCCGGCTGATGAACCGGCTGTCGCCGGGCATTGTGCCGAAAATCAACACCACCGGGGGC 540
                      ************************************************************

consensus_3515#0      GACTACAAGATGATGGACAACATTAACCAGTTCCAAAAGGCGTGCATCAAGTACGGTGTG 540
consensus_3515#1      GACTACCAGATGATGGACAACATTAATCAGTTCC-------------------------- 574
                      ****** ******************* *******                          

consensus_3515#0      GCCGACGTCGACCTCTTCCAGACGACCGATCTGTGGGATCGCAAAAACGTTGCCCTCGTC 600
consensus_3515#1      ------------------------------------------------------------
                                                                                  

consensus_3515#0      ACGACGACCATCTTTGCCGTTGGCCGAGCGTGCTACAAGCATCCGGAGTTCCGCGGCCCG 660
consensus_3515#1      ------------------------------------------------------------
                                                                                  

consensus_3515#0      TACCTGGGACCCCGGCCGGCCGAGG 685
consensus_3515#1      -------------------------