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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[CACTAAAAAAAGGAACCCAACTTCAATATTGGATCCACTTTTCCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATTATATTTTTCCATAACCTCACGGGGAAGGTTCGTCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCAGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATGCTTTGTCTTCTTCATCCATTTTTTTTAAACAAACGACAGCTGTGCTATTGATTTCGTTGACGATTTCAAACAGCAAACCCCCTCTTTCCCAATAGAATCACTTTGCAGGGAGAAGGTGAGGGTATGCAAATTGAACACGGATGCGCCAACGAATGAAGGTATATGGGACCGCGCGTATTGCTCCAGCGGTCATTGGNTCACATCCTGTGTCCTTCTGGTTGCTTATTTTTGTACGAGATAGAGTAA]
[+] EMBL BX624662 [CACTAAAAAAAGGAACCCAACTTCAATATTGGATCCACTTTTCCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATTATATTTTTCCATAACCTCACGGGGAAGGTTCGTCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCAGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATGCTTTGTCTTCTTCATCCATTTTTTTTAAACAAACGACAGCTGTGCTATTGATTTCGTTGACGATTTCAAACAGCAAACCCCCTCTTTCCCAATAGAATCACTTTGCAGGGAGAAGGTGAGGGTATGCAAATTGAACACGGATGCGCCAACGAATGAAGGTATATGGGACCGCGCGTATTGCTCCAGCGGTCATTGGNTCACATCCTGTGTCCTTCTGGTTGCTTATTTTTGTACGAGATAGAGTAA]
consensusID : consensus_3530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CAAACAGTTCGCGTCCGCCAGCACATGGGTATGGCGAAGGCCGTGSCCAACAATACTACCCACCGAAAGGCCATCACAGCAGTAAGCAGCAACATTCCCGCAAAGCAAATTCCAACCCCCGCGAAGGGGTTCGAGCCAATCAGACGAGTGCCACAGTGGTGTACAAGAAGTAGAAGAAAATGGTCGCGTGCTTTTTATTTTTAAAGCGAATGCTCAGGACATCCTTAACACGTACACACACACACATACAAACATCCTAGCAAAAAGGGTCCCATAGCAGCAAAACGGGTGTGTTCCTGTGTGTCCTTCCTAAAGTACAATTCGCAAATTCGCAGTTTGAAACCAAATCCGTAGCAACTTTATCGAGTTTCCACAAAAAAAAGGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCC]
[+] EMBL AGA283148 [CAAACAGTTCGCGTCCGCCAGCACATGGGTATGGCGAAGGCCGTGSCCAACAATACTACCCACCGAAAGGCCATCACAGCAGTAAGCAGCAACATTCCCGCAAAGCAAATTCCAACCCCCGCGAAGGGGTTCGAGCCAATCAGACGAGTGCCACAGTGGTGTACAAGAAGTAGAAGAAAATGGTCGCGTGCTTTTTATTTTTAAAGCGAATGCTCAGGACATCCTTAACACGTACACACACACACATACAAACATCCTAGCAAAAAGGGTCCCATAGCAGCAAAACGGGTGTGTTCCTGTGTGTCCTTCCTAAAGTACAATTCGCAAATTCGCAGTTTGAAACCAAATCCGTAGCAACTTTATCGAGTTTCCACAAAAAAAAGGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCC]
consensusID : consensus_3530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[CCGCTTGATCGCTGAAGGGAAGGAACCACTGTGGGCGAGCTTTGGAACTTGAGAACTCTTTGAAACCAAATCCGTACCAACTTTATCGAGTTTCCACAAAAAAAAGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATACTCTGTCTTCTTCATTCA]
[+] EMBL BM617398 [CCGCTTGATCGCTGAAGGGAAGGAACCACTGTGGGCGAGCTTTGGAACTTGAGAACTCTTTGAAACCAAATCCGTACCAACTTTATCGAGTTTCCACAAAAAAAAGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACCACCATCCCAGAACTATAGCCGTATGAGCAATGCGGAGCTATACGCCGAAGCCTATCCGGATCGGGGCATGTACGAACCACCGAGACGCCCGTATGCTAACAATAAGGTTTGACAAGATCGACGCCAAACACGAGATCACCACCGCAACCAATTGCAACCAACAGCCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCAGTTTCGCTACTGCTGTTGGAAATAATTGTCCCACTTTGTTCCCAGTTACCATACTCTGTCTTCTTCATTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3530#0 ------------------------------------------------------------
consensus_3530#2 CCGCTTGATCGCTGAAGGGAAGGAACCACTGTGGGCGAGCTTTGGAACTTGAGAACTCTT 60
consensus_3530#1 ------------------------------------------------------------
consensus_3530#0 ----------------------------------CACTAAAAAAAGGAACCCAACTTCAA 26
consensus_3530#2 TGAAACCAAATCCGTACCAACTTTATCGAGTTTCCACAAAAAAAAGGAATTCAACTTCAA 120
consensus_3530#1 ------------------------------------CAAACAGTTCGCGTCCGCCAGCA- 23
* ** * * * * **
consensus_3530#0 TATTGGATCCACTTTTCCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGAC 86
consensus_3530#2 TATTGGATCCACTTTCTCAACGCTTCTTATCGTTTGCTTTCGAGACTTTGATGAAGTGAC 180
consensus_3530#1 CATGGGTATGGCGAAGGCCGTGSCCAACAATACTACCCACCGAAAGGCCATCACAGCAGT 83
** ** * * * * * * *** * **
consensus_3530#0 ACCGTGTATT-TCTCAGTTTATTATATTTTTCCATAACCTCACGGGGAAGGTTCGTCC-- 143
consensus_3530#2 ACCGTGTATT-TCTCAGTTTATCATTTTTTTCCATAATCTCACGGGAAAGGTTCGTCCGA 239
consensus_3530#1 AAGCAGCAACATTCCCGCAAAGCAAATTCC-----AACCCCCGCGAAGGGGTTCGAGC-- 136
* * * * * * * * ** ** * * * ****** *
consensus_3530#0 ----------ACTTTTAGGAGAAG-ACACCACCATCCCAGAACTATAGCAGTATGA---- 188
consensus_3530#2 CCATTATGCCACTTTTAGGAGAAG-ACACCACCATCCCAGAACTATAGCCGTATGA---- 294
consensus_3530#1 ---------CAATCAGACGAGTGCCACAGTGGTGTACAAGAAGTAGAAGAAAATGGTCGC 187
* * * *** *** * * **** ** * ***
consensus_3530#0 GCAATGCGGAGCTATACGCCGAA-GCCTATCCGGATCGGGGCATGTACGAACCACCGAGA 247
consensus_3530#2 GCAATGCGGAGCTATACGCCGAA-GCCTATCCGGATCGGGGCATGTACGAACCACCGAGA 353
consensus_3530#1 GTGCTTTTTATTTTTAAAGCGAATGCTCAGGACATCCTTAACACGTACACAC-ACACACA 246
* * * * ** **** ** * * ** **** ** ** * *
consensus_3530#0 CGCCCGTATGCTAACAATAAGG-TTTGACAAGATCGACGCCAA-ACACGAGATCACCACC 305
consensus_3530#2 CGCCCGTATGCTAACAATAAGG-TTTGACAAGATCGACGCCAA-ACACGAGATCACCACC 411
consensus_3530#1 TACAAACATCCTAGCAAAAAGGGTCCCATAGCAGCAAAACGGGTGTGTTCCTGTGTGTCC 306
* ** *** *** **** * * * * * * * **
consensus_3530#0 GCAACCAATTGCAACCAACAG--CCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCA 363
consensus_3530#2 GCAACCAATTGCAACCAACAG--CCGCCACCGTACGCCGATACCGTCGGTACAGTCCGCA 469
consensus_3530#1 TTCCTAAAGTACAATTCGCAAATTCGCAGTTTGAAACCAAATCCGTAGCAACTTTATCGA 366
** * *** ** *** * ** * **** * ** * *
consensus_3530#0 GTTTCGCTACTGCTGTTGGAAAT-AATTGTCCCACTTTGTTCCCAGTTACCATGCTTTGT 422
consensus_3530#2 GTTTCGCTACTGCTGTTGGAAAT-AATTGTCCCACTTTGTTCCCAGTTACCATACTCTGT 528
consensus_3530#1 GTTTCCACAAAAAAAAGGGAATTCAACTTCAATATTGGATCCACTTTCTCAACGCTTCTT 426
***** * **** * ** * * * * * * * * * ** *
consensus_3530#0 CTTCTTCA-TCCATTTTTTTTAAACAAACGACAGC-TGTGCTATTGATTTCGTTGACGAT 480
consensus_3530#2 CTTCTTCA-TTCA----------------------------------------------- 540
consensus_3530#1 ATCGTTTGCTTTCGAGACTTTGATGAAGTGACACCGTGTATTTCTCAGTTTATCATTTTT 486
* ** *
consensus_3530#0 TTCAAACAGCAAACCCCC----TCTTTCCCAATAGAATCACTTTGCAGGGAGAAGGTGAG 536
consensus_3530#2 ------------------------------------------------------------
consensus_3530#1 TTCCATAATCTCACGGGAAAGGTTCGTCCGACCATTATGCCACTTTTAGGAGAAGACACC 546
consensus_3530#0 GGTATGCAAATTGAACACGGATGCGCCAACGAATGAAGGTATATGGGACCGCGCGTATTG 596
consensus_3530#2 ------------------------------------------------------------
consensus_3530#1 ACCATCCCAG--AACTATAGCCGTATGAGC-AATGCGGAGCTATACGCCGAAGCCTATCC 603
consensus_3530#0 CTCCAGCGGTCATTGGNTCACATCCTGTGTCCTTCTGGTTGCTTATTTTTGTACGAGATA 656
consensus_3530#2 ------------------------------------------------------------
consensus_3530#1 ------------------------------------------------------------
consensus_3530#0 GAGTAA 662
consensus_3530#2 ------
consensus_3530#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||