cluster # 3533

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Anopheles gambiae
cluster # 3533 cluster # 3533 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3533#0 length = 720 sequences # 2

consensus_3533#1 length = 511 sequences # 1

consensusID : consensus_3533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence

                              [AGCAAGAATCGGCACGAGGCTGNTTGAGAATGAGTATGGTTCATTCAAGGGCCTGCGAATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCGTACCGGCGACCGGTAAAGCTGCCAAAAATGACGCTCGAAACGGTGTGGCCTGGAAACGGCGTGGATCGATGCTGTCGAAGCACGGTCGAACGATGCTCCGCACAGAAAGATAGTTACTTTCCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA]

[+] EMBL BX469340             [AGCAAGAATCGGCACGAGGCTGNTTGAGAATGAGTATGGTTCATTCAAGGGCCTGCGAATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCGTACCGGCGACCGGTAAAGCTGCCAAAAATGACGCTCGAAACGGTGTGGCCTGGAAACGGCGTGGATCGATGCTGTCGAAGCACGGTCGAACGATGCTCCGCACAGAAAGATAGTTACTTTCCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA]
[+] EMBL AGA283218            [                                                                                                                                                                              CTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCGTACCGGC ACCGGTAAAGCTGCCca                                                                                                                                  ]




>consensus_3533#0
AGCAAGAATCGGCACGAGGCTGNTTGAGAATGAGTATGGTTCATTCAAGGGCCTGCGAAT
GGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTG
CTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCC
ACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTAT
TTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATG
GAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAAC
CAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCC
GGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGAC
GCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTC
GTTGAGTATTTCGGTGATCCAGGCGTACCGGCGACCGGTAAAGCTGCCAAAAATGACGCT
CGAAACGGTGTGGCCTGGAAACGGCGTGGATCGATGCTGTCGAAGCACGGTCGAACGATG
CTCCGCACAGAAAGATAGTTACTTTCCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA

consensusID : consensus_3533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATCAAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTGATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATTGAGAATGAGTATGGTTCATTCAAGGCCTGCGATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGGGTATGGTCNTCAACACGCTCAAGCTGATGCTCC]

[+] EMBL BX620870             [TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATCAAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTGATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATTGAGAATGAGTATGGTTCATTCAAGGCCTGCGATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGGGTATGGTCNTCAACACGCTCAAGCTGATGCTCC]




>consensus_3533#1
TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATC
AAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTG
ATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATT
GAGAATGAGTATGGTTCATTCAAGGCCTGCGATGGGCAGTACATGCAGTTCCTCAAGAAT
TTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTT
CTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAAT
CCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACGCG
GAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGGGT
ATGGTCNTCAACACGCTCAAGCTGATGCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3533#0      ------------------------------------------------------------
consensus_3533#1      TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATC 60
                                                                                  

consensus_3533#0      ------------------------------------------------------------
consensus_3533#1      AAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTG 120
                                                                                  

consensus_3533#0      -----------------------------------AGCAAGAATCGGCACGAGGCTGNTT 25
consensus_3533#1      ATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATT 180
                                                          *    * *    * *     * **

consensus_3533#0      GAGAATGAGTATGGTTCATTCAAGGGCCTGCGAATGGGCAGTACATGCAGTTCCTCAAGA 85
consensus_3533#1      GAGAATGAGTATGGTTCATTCAAGG-CCTGCGA-TGGGCAGTACATGCAGTTCCTCAAGA 238
                      ************************* ******* **************************

consensus_3533#0      ATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGC 145
consensus_3533#1      ATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGC 298
                      ************************************************************

consensus_3533#0      TTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCCACGCTGGACTTTGGCATTACTAACA 205
consensus_3533#1      TTCTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACA 358
                      ********************** *************************************

consensus_3533#0      ATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACG 265
consensus_3533#1      ATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACG 418
                      *************************************************** ********

consensus_3533#0      CGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGG 325
consensus_3533#1      CGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGG 478
                      **************************************** ** **** **** ******

consensus_3533#0      GCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACA 385
consensus_3533#1      GTATGGTCNTCAACACGCTCAAGCTGATGCTCC--------------------------- 511
                      * ****** ***********************                            

consensus_3533#0      TGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTA 445
consensus_3533#1      ------------------------------------------------------------
                                                                                  

consensus_3533#0      AGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATC 505
consensus_3533#1      ------------------------------------------------------------
                                                                                  

consensus_3533#0      CGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCG 565
consensus_3533#1      ------------------------------------------------------------
                                                                                  

consensus_3533#0      TACCGGCGACCGGTAAAGCTGCCAAAAATGACGCTCGAAACGGTGTGGCCTGGAAACGGC 625
consensus_3533#1      ------------------------------------------------------------
                                                                                  

consensus_3533#0      GTGGATCGATGCTGTCGAAGCACGGTCGAACGATGCTCCGCACAGAAAGATAGTTACTTT 685
consensus_3533#1      ------------------------------------------------------------
                                                                                  

consensus_3533#0      CCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA 720
consensus_3533#1      -----------------------------------