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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3535#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 966 fasta sequence
[CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCACCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGCTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATGTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAATATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGTGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTTGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGAGTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAAACGTAA]
[+] EMBL BM591490 [CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCACCACCATCCATACATACACACCTTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTGCTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCATGTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAATATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAGTGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTTTGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAA ]
[-] EMBL AGA283242 [ GGAAGGAAGCCTTCCGTGC GGTTGGAGGGTGTTCTGTATCACCCAATGTTGCAGTTTATGATTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGCGACTAGTGTGCCGTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGGTGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTCGGAGAGTAAAACAAACATACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGCGCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTTTGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGATGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGTGTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCATTATTTAAACGTAA]
consensusID : consensus_3535#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAGCTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGCGTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCTGCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCGCGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAACCCCTCCCGATCACGAT]
[+] EMBL BM622699 [AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTTGCAATTTGCTTCGGTAAAAGGGATTAACTGCAGGTAAATCCTATACAGTGGTGATTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGGGTCAGGAACAAGCTGTGAAGCCTTCTCATTGTGGTGCTGTGTTGTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTCGTTACCTCTTAACCTTACACGGCTTGTGCCGTTGTGTGTGCGCGCGTGTGTGTGTGTGTTGTATTTTTATGTTTTATTGCCCCTGTTTGTGGAACTAATTATTCTGCTTTAAAAACGATGTTTCGCTCGCTTTTATCAACAATTTATCAACGATGTCAAACGTGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGTGCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCCTGGCTCCTTCTCCGCGGGGTCCGCGCGTCGCCGCGTAAGGGCCTTGTTATCAAGCAACATTTTGTGTTGGACCGTTGTTTTCAACCCCTCCCGATCACGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3535#0 CCGCTTAAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT 60
consensus_3535#1 ------AAACTGTGTGGATGTGCGTCGTCCGTGCTCTCGAGTTTTTGAGCTAAAAGCCTT 54
******************************************************
consensus_3535#0 GCAATTTGCTTCGGTAAAAAGGGATTAACTGCAGCTCCGGCGATAGACGGCAACACATCA 120
consensus_3535#1 GCAATTTGCTTCGGTAAAA-GGGATTAACTGCAGGTAAATCC-TATACAGTG----GTGA 108
******************* ************** * * ** ** * * *
consensus_3535#0 CCACCATCCATACATACACACC-TTATCGTAGGGTGCCTTTGCTCCCTTTTTTCCGGTTG 179
consensus_3535#1 TTCCTATTGGAGTGTGTGTATTGTTTTCGAGGTGGAAAATTCCATTCGCTGCAGCGGTGG 168
* ** * * ** *** * * ** * * * **** *
consensus_3535#0 CTCCGGCAGCAGTACCGTGTGTGTGTGTCTCTGTGTACGTGCGTGTGCCGCTGTGTGCAT 239
consensus_3535#1 GTCAGGAACAAGC--------TGTGAAGCCTTCT---CAT---TGTGGTGCTGTGT---T 211
** ** * ** **** * * * * * **** ******* *
consensus_3535#0 GTTTTTGGCGGTGTGCGCGACGTTGTGTGTGTGCGCTTTGTCCCCAAATGGTGGTGTGAA 299
consensus_3535#1 GTGCTGGGTAGAAGAAAAAGTGTAGAAAGAAGACACTTCGCTTC-----------GTTAC 260
** * ** * ** * * * *** * * ** *
consensus_3535#0 TATTGAGAAGTGCGTCTGATAAGAAAGCTTTTGAAGTTGACGAAGAAAAAAGAGCTCCAG 359
consensus_3535#1 CTCTTAA-------CCTTACACG---GCTTGTGCCGTTGT-------GTGTGCGCGCGTG 303
* * ** * * * **** ** **** * ** * *
consensus_3535#0 TGGTGCGTGTGCTTGTGTGTATGTGCTTATGTGCGAGCGGGTTTGCGGTGTATGAGGGTT 419
consensus_3535#1 TG-TGTGTGTG-TTGTATTTTTATGTTTTATTGC--CCCTGTTTGTGGAAC-TAATTATT 358
** ** ***** **** * * * ** ** *** * ***** ** * * **
consensus_3535#0 TGGCTAAAGGAAAAGCAGGAAGGAAGCCTTCCGTGCGGGGTGGGAGGGTGCTCTGTATCA 479
consensus_3535#1 CTGCTTTAAAAACGATGTTTCGCTCGC-TTTTATCAACAATTTATCAACGATGTCAAACG 417
*** * ** * ** ** * * * * * * *
consensus_3535#0 CCCAATGTTGCAGTTTATGA--TTGTTGCCGGTGGAAAGTGTTTTCCGAAATTCATGTGC 537
consensus_3535#1 TGTGGCTCTGATGCTGACGGGCTTACGGCAACACGGGTGTGTCCGCGGGTGCTGCTGTGT 477
** * * * * ** ** * **** * * * ****
consensus_3535#0 GACTAGTGTGCC--GTGTCGTGATTTTGGGGGCAGCTGCTATGGTGATCACTATAGGTGG 595
consensus_3535#1 GCGTAAAGTGTCTAGTGTCGCTAGCTTACCGCCACCCC---TGGC--TCCTTCTCCGCGG 532
* ** *** * ****** * ** * ** * *** ** * * * **
consensus_3535#0 TGAAAATCTGTGTACCGTCGTCAAGCAAAGGGGAGTGTAATTTTTTAGTGAGCTGCGGTC 655
consensus_3535#1 ----GGTCCGCG---CGTCGCCGCGTAA-GGGCCTTGTTATCAAGCAACATTTTGTGTTG 584
** * * ***** * * ** *** *** ** * ** * *
consensus_3535#0 GGAGAGTAAAACAAACA--TACCGAGCGCGTACAGCTTCTTCCTGTTTTCCTGCGGGTGC 713
consensus_3535#1 GACCGTTGTTTTCAACCCCTCCCGATCACGAT---------------------------- 616
* * *** * **** * **
consensus_3535#0 GCAACGACTTACAGCCAACGGACGGTGGGAAAGACCGCGCCGCGAACACGGAATACGTTT 773
consensus_3535#1 ------------------------------------------------------------
consensus_3535#0 TGAATCAGCCAGCAGAGAAGAAGCGATCTCGTGTGAGATCGCTCTCTCGTTACACCTTGA 833
consensus_3535#1 ------------------------------------------------------------
consensus_3535#0 TGTCGTTCTATGCGCGGCTATTCGTAGCAATCCTTGCTGCTAATGATGATTAAATTGTGT 893
consensus_3535#1 ------------------------------------------------------------
consensus_3535#0 GTGTTTGTGGAGAAGAACGCATGTAATGAGCAGCGTCCCGACAACGGTCTCTCATTTCAT 953
consensus_3535#1 ------------------------------------------------------------
consensus_3535#0 TATTTAAACGTAA 966
consensus_3535#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||