cluster # 3538

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3538 cluster # 3538 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3538#0 length = 564 sequences # 1

consensus_3538#1 length = 542 sequences # 1
consensus_3538#2 length = 308 sequences # 1

consensusID : consensus_3538#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [AGGCAGNCTCGGTCTAAGGAGCAGTCGTGCTTTGTACCTACGGAAAAGGATTCTCCTAGCAAACGTGTACCGGAAGCAGGAAGTGGTCGCTCTATCGGAACTAGAATTAGCGTGCTTTGTTGTTGTTGTTGCTGTGCCAGTTTGGAGCGGAAATGGAAGGTTCTACTGCTGCCGTGCTGCGGCGGGAAGTGCCAATGAGCCATCTTTTCGATGGCGGTGCACTGAACGTGTACGATCAGCAGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGCGTTGGCAAGAGTGCGCAATTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCGAAATCGCTCGCCTNCTTCCTTGCCGACGGGGTATCGGAGCGAGGTAAACATTGTTCCGGATCTAGGTNCAAAACCCAAGTGGATGCGACGAAACGGGACTGCACCTGATACTCTGCCAGCCTGGGTCCGAGTCTGGCGGGCGTAATAATTCCGGCCGACNACAG]

[+] EMBL BX469101             [AGGCAGNCTCGGTCTAAGGAGCAGTCGTGCTTTGTACCTACGGAAAAGGATTCTCCTAGCAAACGTGTACCGGAAGCAGGAAGTGGTCGCTCTATCGGAACTAGAATTAGCGTGCTTTGTTGTTGTTGTTGCTGTGCCAGTTTGGAGCGGAAATGGAAGGTTCTACTGCTGCCGTGCTGCGGCGGGAAGTGCCAATGAGCCATCTTTTCGATGGCGGTGCACTGAACGTGTACGATCAGCAGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGCGTTGGCAAGAGTGCGCAATTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCGAAATCGCTCGCCTNCTTCCTTGCCGACGGGGTATCGGAGCGAGGTAAACATTGTTCCGGATCTAGGTNCAAAACCCAAGTGGATGCGACGAAACGGGACTGCACCTGATACTCTGCCAGCCTGGGTCCGAGTCTGGCGGGCGTAATAATTCCGGCCGACNACAG]




>consensus_3538#0
AGGCAGNCTCGGTCTAAGGAGCAGTCGTGCTTTGTACCTACGGAAAAGGATTCTCCTAGC
AAACGTGTACCGGAAGCAGGAAGTGGTCGCTCTATCGGAACTAGAATTAGCGTGCTTTGT
TGTTGTTGTTGCTGTGCCAGTTTGGAGCGGAAATGGAAGGTTCTACTGCTGCCGTGCTGC
GGCGGGAAGTGCCAATGAGCCATCTTTTCGATGGCGGTGCACTGAACGTGTACGATCAGC
AGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGCGTTGGCAAGAGTGCGCAA
TTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTC
TTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCGAAATCGCTCGCCTNCTTCCT
TGCCGACGGGGTATCGGAGCGAGGTAAACATTGTTCCGGATCTAGGTNCAAAACCCAAGT
GGATGCGACGAAACGGGACTGCACCTGATACTCTGCCAGCCTGGGTCCGAGTCTGGCGGG
CGTAATAATTCCGGCCGACNACAG

consensusID : consensus_3538#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 542
fasta sequence

                              [ACTGAACGTGTACGATCAGCAGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGCTTGGCAAGAGTGCGCAATTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCAAATCGCTCGCCTCCTTCCTTGCCGACGGCTATCGGAGCGAGGTAAACATGTCCGATCTGGTTCAAACCAGTGGTGCGACGAACGGGCTGCACCTGATACTCTCCACCCTGGTCGATCTGGCGGGCGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGAAACCATCGCCCAGTTTAATACCATGAAAATAGTACCAGTGCCCCTTGACGAGGACGGCCCTAACATCGCCACTCTGCAGGCGTTGATCGATCAGCACCGGTTCGAGCCGACGAAAGGGAAACTGTATGNGCGTTTATTACACGATGCCGACGTTCCACAACCCGACGGTATCGTCTTCTCCGAGGCAAAGTGTCAAC]

[+] EMBL AGA283277            [ACTGAACGTGTACGATCAGCAGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGCTTGGCAAGAGTGCGCAATTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCAAATCGCTCGCCTCCTTCCTTGCCGACGGCTATCGGAGCGAGGTAAACATGTCCGATCTGGTTCAAACCAGTGGTGCGACGAACGGGCTGCACCTGATACTCTCCACCCTGGTCGATCTGGCGGGCGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGAAACCATCGCCCAGTTTAATACCATGAAAATAGTACCAGTGCCCCTTGACGAGGACGGCCCTAACATCGCCACTCTGCAGGCGTTGATCGATCAGCACCGGTTCGAGCCGACGAAAGGGAAACTGTATGNGCGTTTATTACACGATGCCGACGTTCCACAACCCGACGGTATCGTCTTCTCCGAGGCAAAGTGTCAAC]




>consensus_3538#1
ACTGAACGTGTACGATCAGCAGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTT
GCTTGGCAAGAGTGCGCAATTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCT
AAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCAA
ATCGCTCGCCTCCTTCCTTGCCGACGGCTATCGGAGCGAGGTAAACATGTCCGATCTGGT
TCAAACCAGTGGTGCGACGAACGGGCTGCACCTGATACTCTCCACCCTGGTCGATCTGGC
GGGCGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGAAACCATCGCCCAGTT
TAATACCATGAAAATAGTACCAGTGCCCCTTGACGAGGACGGCCCTAACATCGCCACTCT
GCAGGCGTTGATCGATCAGCACCGGTTCGAGCCGACGAAAGGGAAACTGTATGNGCGTTT
ATTACACGATGCCGACGTTCCACAACCCGACGGTATCGTCTTCTCCGAGGCAAAGTGTCA
AC

consensusID : consensus_3538#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [CCGCCCACGCGTCCGCACGTAGAGGGCGTTATCATCGTAGCGTTTTACGTTTGAAATGAGCGTTAATGAAAAAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGGACGACGGAATTTCGCAAATCGCTCGCCTCCTTCCTCGCCGACGGCTATCGGAGCGAGGTAAACATGTCCGATCTGGTTCAAACCAGTGGTGCGACGAACGGGCTGCACCTGATACTCTCCACCCTGGTCGATCTGGCGGGCGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGA]

[+] EMBL BM631091             [CCGCCCACGCGTCCGCACGTAGAGGGCGTTATCATCGTAGCGTTTTACGTTTGAAATGAGCGTTAATGAAAAAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCGATTGGGACGACGGAATTTCGCAAATCGCTCGCCTCCTTCCTCGCCGACGGCTATCGGAGCGAGGTAAACATGTCCGATCTGGTTCAAACCAGTGGTGCGACGAACGGGCTGCACCTGATACTCTCCACCCTGGTCGATCTGGCGGGCGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGA]




>consensus_3538#2
CCGCCCACGCGTCCGCACGTAGAGGGCGTTATCATCGTAGCGTTTTACGTTTGAAATGAG
CGTTAATGAAAAAAATATGAGCTAAAAAATTCATCCTTCCTCTTCCAATACGGTCCATCG
ATTGGGACGACGGAATTTCGCAAATCGCTCGCCTCCTTCCTCGCCGACGGCTATCGGAGC
GAGGTAAACATGTCCGATCTGGTTCAAACCAGTGGTGCGACGAACGGGCTGCACCTGATA
CTCTCCACCCTGGTCGATCTGGCGGGCGTAATATTCGTCGACGAGTACACGTACATGATA
GCGCTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3538#1      ------------------------------------------------------------
consensus_3538#2      ------------------------------------------------------------
consensus_3538#0      AGGCAGNCTCGGTCTAAGGAGCAGTCGTGCTTTGTACCTACGGAAAAGGATTCTCCTAGC 60
                                                                                  

consensus_3538#1      ------------------------------------------------------------
consensus_3538#2      ------------------------------------------------------------
consensus_3538#0      AAACGTGTACCGGAAGCAGGAAGTGGTCGCTCTATCGGAACTAGAATTAGCGTGCTTTGT 120
                                                                                  

consensus_3538#1      ------------------------------------------------------------
consensus_3538#2      ------------------------------------------------------------
consensus_3538#0      TGTTGTTGTTGCTGTGCCAGTTTGGAGCGGAAATGGAAGGTTCTACTGCTGCCGTGCTGC 180
                                                                                  

consensus_3538#1      ----------------------------------------ACTGAACGTGTACGATCAGC 20
consensus_3538#2      ------------------------------------------------------------
consensus_3538#0      GGCGGGAAGTGCCAATGAGCCATCTTTTCGATGGCGGTGCACTGAACGTGTACGATCAGC 240
                                                                                  

consensus_3538#1      AGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGC-TTGGCAAGAGTGCGCAA 79
consensus_3538#2      -------CCGCCCACGCGTCCGCACGTAGAGGGCG--TTATC-ATCGTA---GCGTTTTA 47
consensus_3538#0      AGGTGGCCAACCTGTCGGCCGGTGCACCGGGGCCGGATTTGCGTTGGCAAGAGTGCGCAA 300
                             *  **     * * *  *   * ** **  **  *  * * *   * *    *

consensus_3538#1      TTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTC 139
consensus_3538#2      CGTTTGAAATGAGCGTT-----AATGAAAAAAATATGAGCTAAAAAATTCATCCTTCCTC 102
consensus_3538#0      TTCTTTCAGCAAGCTACCGAAGAGCGGATCAAATATGAGCTAAAAAATTCATCCTTCCTC 360
                         **  *   ***        *  * *  ******************************

consensus_3538#1      TTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGC-AAATCGCTCGCCTCCTTCCT 198
consensus_3538#2      TTCCAATACGGTCCATCGATTGGGACGACGGAATTTCGC-AAATCGCTCGCCTCCTTCCT 161
consensus_3538#0      TTCCAATACGGTCCATCGATTGGTACGACGGAATTTCGCGAAATCGCTCGCCTNCTTCCT 420
                      *********************** *************** ************* ******

consensus_3538#1      TGCCGACGGC-TATCGGAGCGAGGTAAACAT-GTCC--GATCT-GGTTCAAACC---AGT 250
consensus_3538#2      CGCCGACGGC-TATCGGAGCGAGGTAAACAT-GTCC--GATCT-GGTTCAAACC---AGT 213
consensus_3538#0      TGCCGACGGGGTATCGGAGCGAGGTAAACATTGTTCCGGATCTAGGTNCAAAACCCAAGT 480
                       ********  ******************** ** *  ***** *** **** *   ***

consensus_3538#1      GG-TGCGACGAAC--GGGCTGCACCTGATACTCT-CCACCCTGG--TCGA-TCTGGCGGG 303
consensus_3538#2      GG-TGCGACGAAC--GGGCTGCACCTGATACTCT-CCACCCTGG--TCGA-TCTGGCGGG 266
consensus_3538#0      GGATGCGACGAAACGGGACTGCACCTGATACTCTGCCAGCCTGGGTCCGAGTCTGGCGGG 540
                      ** *********   ** **************** *** *****   *** *********

consensus_3538#1      CGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGAAACCATCGCCCAGTTTAA 363
consensus_3538#2      CGTAATATTCGTCGACGAGTACACGTACATGATAGCGCTCGA------------------ 308
consensus_3538#0      CGTAATAATTCCGGCCGACNACAG------------------------------------ 564
                      ******* *    * ***  ***                                     

consensus_3538#1      TACCATGAAAATAGTACCAGTGCCCCTTGACGAGGACGGCCCTAACATCGCCACTCTGCA 423
consensus_3538#2      ------------------------------------------------------------
consensus_3538#0      ------------------------------------------------------------
                                                                                  

consensus_3538#1      GGCGTTGATCGATCAGCACCGGTTCGAGCCGACGAAAGGGAAACTGTATGNGCGTTTATT 483
consensus_3538#2      ------------------------------------------------------------
consensus_3538#0      ------------------------------------------------------------
                                                                                  

consensus_3538#1      ACACGATGCCGACGTTCCACAACCCGACGGTATCGTCTTCTCCGAGGCAAAGTGTCAAC 542
consensus_3538#2      -----------------------------------------------------------
consensus_3538#0      -----------------------------------------------------------