cluster # 3542

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Anopheles gambiae
cluster # 3542 cluster # 3542 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3542#0 length = 735 sequences # 2

consensus_3542#1 length = 616 sequences # 1

consensusID : consensus_3542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 735
fasta sequence

                              [CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGGGCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGCTACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTG]

[+] EMBL BM614288             [CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGGGCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGC                                                                                                               ]
[+] EMBL BM618697             [                                                                                                                    ccGGGCGGATCGGGCTCCGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGCTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGCTACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACGGTACCAGCAGCAGTG]




>consensus_3542#0
CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCA
CCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGG
GCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGA
TGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCG
TACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGAT
CGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGA
TGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGA
CGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATC
AGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAAC
ACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGC
AACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGC
TACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACG
GTACCAGCAGCAGTG

consensusID : consensus_3542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCTTCATCATCAGCAACAGCAACACCTAGGCTCGTCGCAACACAATGGTCCCTGTGGGGGCAGTGCCGGCAGTGGAAGTGCTTCCGG]

[+] EMBL BM634293             [CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGACGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCTTCATCATCAGCAACAGCAACACCTAGGCTCGTCGCAACACAATGGTCCCTGTGGGGGCAGTGCCGGCAGTGGAAGTGCTTCCGG]




>consensus_3542#1
CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGATGA
CGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCGTAC
GGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGATCGA
AGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGATGC
AACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGACGC
TGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATCAGC
AACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAACACC
AACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGCAAC
AACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCTTCATCATC
AGCAACAGCAACACCTAGGCTCGTCGCAACACAATGGTCCCTGTGGGGGCAGTGCCGGCA
GTGGAAGTGCTTCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3542#0      CCGATCATCATCATTCGCTACACACGAACCGGCCACACTCCGTTAGCTCCACGAGCTCCA 60
consensus_3542#1      ------------------------------------------------------------
                                                                                  

consensus_3542#0      CCATTTCACCCCGCCACGGTACCAGCAGCAGTGGTGGAGGTAGCTGCTACAACGGCCTGG 120
consensus_3542#1      ------------------------------------------------------------
                                                                                  

consensus_3542#0      GCGGATCGGGCTCCGGCAACGGACTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGA 180
consensus_3542#1      ---CCGCGGGCTCTGGCAATGGGCTCTCCTCCGAGGATCTCATCAACGACGAGCTGCTGA 57
                            ******* ***** ** *************************************

consensus_3542#0      TGACGCTGTCGGTGCGCGAGCTGAACAAGCGGTTGCATGGCTGCCCGCGGGATCAGGTCG 240
consensus_3542#1      TGACGTTGTCGGTGCGCGAGCTGAACAAACGGTTGCATGGCTGCCCGCGGGATCAGGTCG 117
                      ***** ********************** *******************************

consensus_3542#0      TACGGTTGAAGCAAAAGCCGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGAT 300
consensus_3542#1      TACGGTTGAAGCAAAAGCGGCGTACCCTGAAGAACCGAGGCTACGCACAGAACTGTCGAT 177
                      ****************** *****************************************

consensus_3542#0      CGAAGCGATTGCAACAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGA 360
consensus_3542#1      CGAAGCGGCTGCAGCAGCGCCACGACCTGGAGATCACCAATCGCCATCTCCATCACGAGA 237
                      *******  **** **********************************************

consensus_3542#0      TGCAACAGATGAAGATGGAGCTGGCCAAGATAAAACAGGAACGGGACGAGCTCATCCAGA 420
consensus_3542#1      TGCAACAGATGAAGATGGAGCTGGCCAAGATAAAGCAGGAACGGGACGAGCTCATCCAGA 297
                      ********************************** *************************

consensus_3542#0      CGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATC 480
consensus_3542#1      CGCTGCAGATGCACCAGCGCGACCAGTCAACACAGCAGACGGCAGGCGTGTTGCAACATC 357
                      ************************************************************

consensus_3542#0      AGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAAC 540
consensus_3542#1      AGCAACATCAACAGGCACACCATAAGCAACAGCAACATCAACACCAGCAGCAACACCAAC 417
                      ************************************************************

consensus_3542#0      ACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGC 600
consensus_3542#1      ACCAACACCAGCAACAGCATCAGCAGCATGCACACTATCAGCAGCAGTCTCGGCAGCAGC 477
                      ************************************************************

consensus_3542#0      AACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATCATTCGC 660
consensus_3542#1      AACAACAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAACAACATCATC-TTCAT 536
                      ****************************************************** ***  

consensus_3542#0      TACACACGAACCGGCCACACTCCGTCAGCTCCACGAGCTCCACCATTTCACCCCGCCACG 720
consensus_3542#1      CATCAGCAA--CAGCAACACCTAG---GCTCGTCGCAACACAATGGTCCCTGTGGGGGCA 591
                       *    * *  * ** ****   *   ****  **     **    * *     *   * 

consensus_3542#0      GTACCAGCAGCAGTG---------- 735
consensus_3542#1      GTGCCGGCAGTGGAAGTGCTTCCGG 616
                      ** ** ****  *