cluster # 3556

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Anopheles gambiae
cluster # 3556 cluster # 3556 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3556#0 length = 640 sequences # 1

consensus_3556#1 length = 632 sequences # 2

consensusID : consensus_3556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGGTATGGTGGCACCGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTTCCCGGTATCTTTCCAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGCTCCTCTGTGCTGAGCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT]

[+] EMBL BX626667             [TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGGTATGGTGGCACCGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTTCCCGGTATCTTTCCAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGCTCCTCTGTGCTGAGCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT]




>consensus_3556#0
TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCA
AAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACA
ACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTG
ATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAA
AGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACT
CGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGGTATGGTGGCAC
CGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTTCCCGGTATCTTTC
CAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTG
CCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAG
ACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGCTCCTCTGTGCTGA
GCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT

consensusID : consensus_3556#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence

                              [CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCGTTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGC--GCAGCGGCAACAGCTCCTCTGTGCTGAACAAAGTTGTGTACCGGTTGAACAAATTTCCCAA]

[+] EMBL BM613843             [CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCGTTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGC  GCAGCGGCAACAGCTCCTCTGTGCTGAACAAAGTTGTGTACCGGTTGAACAAATTTCCCAA]
[-] EMBL BX628387             [                                                                                                             CATTTTTTTACTTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTAGCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCACACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCATCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTATCAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGATGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGACATTGACGAAA AAAAAAAAAAAAAAACAGGCATGTTGCGGC  C GCTCCaacatc                                      ]




>consensus_3556#1
CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCG
TTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTAC
TTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTA
GCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCAC
ACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCA
TCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTAT
CAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGAT
GTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCGCGAAATAAACTTGCC
CGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGACGATCAGGATGTAGAC
ATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGCTCCTCTGTGCTGAAC
AAAGTTGTGTACCGGTTGAACAAATTTCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3556#0      ------------------------------------------------------------
consensus_3556#1      CCGGTTTGTTGTTAGTGGTTCGTGCAAAGAAGTTGGCGTACAAAATCAAACACACATTCG 60
                                                                                  

consensus_3556#0      -------------TTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTAC 47
consensus_3556#1      TTATTTATATAAATTTATCCGCTCCAATCGAATTTTTGACTCTTTAAATCATTTTTTTAC 120
                                   ***********************************************

consensus_3556#0      TTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTA 107
consensus_3556#1      TTGCTTCAGTTCAAAACCGCAACAGCGCGTCGCAATATGACCAATTGTTCGTGTGCCGTA 180
                      ************************************************************

consensus_3556#0      GCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCAC 167
consensus_3556#1      GCGGACTGCAACAACAACAGGCGGAATGTGAGAAAACGCATGCTCGACATTGGTTTCCAC 240
                      ************************************************************

consensus_3556#0      ACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCA 227
consensus_3556#1      ACGTTCCCGAGTGATCCGGTGCAGAGGCAGCGATGGGTGAAGTTTTGCCAGCGCGAACCA 300
                      ************************************************************

consensus_3556#0      TCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTAT 287
consensus_3556#1      TCCTGGCAGCCAAAGTCCTGCGATTCGATGTGTTCGGTCCATTTCAAAGACACCGATTAT 360
                      ************************************************************

consensus_3556#0      CAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGAT 347
consensus_3556#1      CAAATGTCCCACTCGCCGTTGATACGATTGGCAACGAATTTGAGAAGGCTCAAGCCGGAT 420
                      ************************************************************

consensus_3556#0      GGTATGGTGGCACCGAGTGTCTTACCGCCTTTCTTGGGGCAATTCTTCTGACTTGCGTTT 407
consensus_3556#1      G----------------------------------------------------------- 421
                      *                                                           

consensus_3556#0      CCCGGTATCTTTCCAGTGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCG 467
consensus_3556#1      ----------------TGATTCCCACTATCCGGAAGGGCCGTGCTATTCCAGTAGCAGCG 465
                                      ********************************************

consensus_3556#0      CGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGAC 527
consensus_3556#1      CGAAATAAACTTGCCCGGGAAGCTCGGCAGAAGCTCGAGCAGGAGCTGTACAGCAAAGAC 525
                      ************************************************************

consensus_3556#0      GATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGC 587
consensus_3556#1      GATCAGGATGTAGACATTGACGAAATATGTAAAACGAAATACAAGCGCAGCGGCAACAGC 585
                      ************************************************************

consensus_3556#0      TCCTCTGTGCTGAGCAAAGTTGTGTACCGGTTGAACAAATTCCCCAACATTTT 640
consensus_3556#1      TCCTCTGTGCTGAACAAAGTTGTGTACCGGTTGAACAAATTTCCCAA------ 632
                      ************* *************************** *****