cluster # 3557

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Anopheles gambiae
cluster # 3557 cluster # 3557 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3557#0 length = 1153 sequences # 2

consensus_3557#1 length = 460 sequences # 1

consensusID : consensus_3557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1153
fasta sequence

                              [ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGAGGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTGAAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTTGCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTCCTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACGATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGGAACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGTTAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAAAGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATTTATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAAATATGGCAAAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGACCGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACAAAGGAGAACAACAAACACATACACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTTCCCGCGAAGGTGCACTACTGAAATACCATCAAGCAAAATGTTGTCCATTAAAAATGAAAGCCTAGCAAAG]

[+] EMBL BX616910             [ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGAGGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTGAAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTTGCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTCCTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACGATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGGAACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGTTAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAAAGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATTTATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX626600             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATTTATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATNTACGTAAATATGGCAAAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGACCGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACAAAGGAGAACAACAAACACATACACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTTCCCGCGAAGGTGCACTACTGAAATACCATCAAGCAAAATGTTGTCCATTAAAAATGAAAGCCTAGCAAAG]




>consensus_3557#0
ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGA
GGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTG
AAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTT
GCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTC
CTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACG
ATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGG
AACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGT
TAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAA
AGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATT
TATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAAATATGGCA
AAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGAC
CGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAA
CTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAGAAAACATGAAATGAAGATACA
CATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCAC
ACACACAAAGGAGAACAACAAACACATACACACACACACACACATACACGGCCTAGCTGG
ACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATT
ATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTA
CACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTG
CTTCCCGCGAAGGTGCACTACTGAAATACCATCAAGCAAAATGTTGTCCATTAAAAATGA
AAGCCTAGCAAAG

consensusID : consensus_3557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [CCGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACACACACATGAGAGCAACAAACACATACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTCCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA]

[+] EMBL BM613824             [CCGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACACACACATGAGAGCAACAAACACATACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTCCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA]




>consensus_3557#1
CCGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAACCTTGTAAC
TGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATACA
CATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCAC
ACACACACACACATGAGAGCAACAAACACATACACACACACACACATACACGGCCTAGCT
GGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAA
TTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTT
TACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCAC
TGCTCCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3557#0      ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGA 60
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      GGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTG 120
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      AAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTT 180
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      GCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTC 240
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      CTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACG 300
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      ATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGG 360
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      AACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGT 420
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      TAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAA 480
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      AGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATT 540
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      TATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAAATATGGCA 600
consensus_3557#1      ------------------------------------------------------------
                                                                                  

consensus_3557#0      AAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGAC 660
consensus_3557#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_3557#0      CGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAA 720
consensus_3557#1      CGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAA--ACCTTGTAA 59
                      **        *   *** *        * ** *****************  *********

consensus_3557#0      CTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAA-GAAAACATGAAATGAAGATAC 779
consensus_3557#1      CTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATAC 119
                      ************************************** *********************

consensus_3557#0      ACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCA 839
consensus_3557#1      ACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCA 179
                      ************************************************************

consensus_3557#0      CACACACAAAG----GAGAACAACAAACACATACACACACACACACACATACACGGCCTA 895
consensus_3557#1      CACACACACACACATGAGAGCAACAAACACATACACACACACACACA--TACACGGCCTA 237
                      ******** *     **** ***************************  ***********

consensus_3557#0      GCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGC 955
consensus_3557#1      GCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGC 297
                      ************************************************************

consensus_3557#0      TAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCA 1015
consensus_3557#1      TAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCA 357
                      ************************************************************

consensus_3557#0      CTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAAC 1075
consensus_3557#1      CTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAAC 417
                      ************************************************************

consensus_3557#0      CACTGCTTCCCGCGAAGGTGCACTACTG-AAATACCATCAAGCAAAATGTTGTCCATTAA 1134
consensus_3557#1      CACTGCT-CCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA---------------- 460
                      ******* ******************** ***************                

consensus_3557#0      AAATGAAAGCCTAGCAAAG 1153
consensus_3557#1      -------------------