cluster # 3564

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Anopheles gambiae
cluster # 3564 cluster # 3564 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3564#0 length = 524 sequences # 1

consensus_3564#1 length = 318 sequences # 2

consensusID : consensus_3564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [AATCCGAGGTAACGAGGCAATCTGACCAGGCTCAGCTTTCTCTGCCAAGAACAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCTCCGACCCGGGTGCTGTGGCAGCGACGCTGACCGCGGGAGTGGTTCTGCCCGGCCGGGGACGTTGCGTGCCTGCCCCGGCAGTTAAGGCAATTGAAAGCCCGGGAACCGGGCCATTGNGAATAACCGGCTTGTTCCTCGGAATTTCAAGGCCGAACCGTTTACGAACACACAGCCCGNTCCGGAAAGGCAAAGAAGCCGACACCGTTGGCCTTGATTGAACCCCAGGGGGCTATAACACCAAAAGCCCGGTTTCAACCAAAAGGCCGCCCCGAAACAACGTTGCAAGGAGCCAGACTTAAACAAAAATTGCCAAGNTCANGGGGGCGACGGCGATTGTCCCGGTGAAACCA]

[+] EMBL AL696419             [AATCCGAGGTAACGAGGCAATCTGACCAGGCTCAGCTTTCTCTGCCAAGAACAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCTCCGACCCGGGTGCTGTGGCAGCGACGCTGACCGCGGGAGTGGTTCTGCCCGGCCGGGGACGTTGCGTGCCTGCCCCGGCAGTTAAGGCAATTGAAAGCCCGGGAACCGGGCCATTGNGAATAACCGGCTTGTTCCTCGGAATTTCAAGGCCGAACCGTTTACGAACACACAGCCCGNTCCGGAAAGGCAAAGAAGCCGACACCGTTGGCCTTGATTGAACCCCAGGGGGCTATAACACCAAAAGCCCGGTTTCAACCAAAAGGCCGCCCCGAAACAACGTTGCAAGGAGCCAGACTTAAACAAAAATTGCCAAGNTCANGGGGGCGACGGCGATTGTCCCGGTGAAACCA]




>consensus_3564#0
AATCCGAGGTAACGAGGCAATCTGACCAGGCTCAGCTTTCTCTGCCAAGAACAGTGCGAC
GTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTC
AGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCTCCGACC
CGGGTGCTGTGGCAGCGACGCTGACCGCGGGAGTGGTTCTGCCCGGCCGGGGACGTTGCG
TGCCTGCCCCGGCAGTTAAGGCAATTGAAAGCCCGGGAACCGGGCCATTGNGAATAACCG
GCTTGTTCCTCGGAATTTCAAGGCCGAACCGTTTACGAACACACAGCCCGNTCCGGAAAG
GCAAAGAAGCCGACACCGTTGGCCTTGATTGAACCCCAGGGGGCTATAACACCAAAAGCC
CGGTTTCAACCAAAAGGCCGCCCCGAAACAACGTTGCAAGGAGCCAGACTTAAACAAAAA
TTGCCAAGNTCANGGGGGCGACGGCGATTGTCCCGGTGAAACCA

consensusID : consensus_3564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 318
fasta sequence

                              [AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACCGACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGCCTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCCGCGGAGTGGTTCGCCGGC]

[-] EMBL AGA284076            [AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACCGACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGCCTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCCGCGGAGTGGTTCGCCGGC]
[-] EMBL AGA283644            [                                                                               GCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGCCTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCCGCGGAGTGGTTCGCCGGC]




>consensus_3564#1
AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACC
GACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGC
CTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTC
CGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAA
CTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCC
GCGGAGTGGTTCGCCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3564#0      ------------------------------------------------------------
consensus_3564#1      AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACC 60
                                                                                  

consensus_3564#0      ------------------------AATCCGAGGTAACGAGGCA---ATCTGACCAGG--- 30
consensus_3564#1      GACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGC 120
                                                * **    * **  ***   ********  *   

consensus_3564#0      CTCAGCTTTCTCTGCCAAGAAC-AGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCT 89
consensus_3564#1      CTCAGCTTTCTC-GCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCT 179
                      ************ ********* *************************************

consensus_3564#0      CCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGA 149
consensus_3564#1      CCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGA 239
                      ************************************************************

consensus_3564#0      ACTGTTCCAGGATGATCTGTTCCCTCCGACCCGGGTGCTGTGGCAGC-GACGCTGACCGC 208
consensus_3564#1      ACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGC 299
                      ************************ ********************** ************

consensus_3564#0      GG--GAGTGGTTCTGCCCGGCCGGGGACGTTGCGTGCCTGCCCCGGCAGTTAAGGCAATT 266
consensus_3564#1      CGCGGAGTGGTTCG--CCGGC--------------------------------------- 318
                       *  *********   *****                                       

consensus_3564#0      GAAAGCCCGGGAACCGGGCCATTGNGAATAACCGGCTTGTTCCTCGGAATTTCAAGGCCG 326
consensus_3564#1      ------------------------------------------------------------
                                                                                  

consensus_3564#0      AACCGTTTACGAACACACAGCCCGNTCCGGAAAGGCAAAGAAGCCGACACCGTTGGCCTT 386
consensus_3564#1      ------------------------------------------------------------
                                                                                  

consensus_3564#0      GATTGAACCCCAGGGGGCTATAACACCAAAAGCCCGGTTTCAACCAAAAGGCCGCCCCGA 446
consensus_3564#1      ------------------------------------------------------------
                                                                                  

consensus_3564#0      AACAACGTTGCAAGGAGCCAGACTTAAACAAAAATTGCCAAGNTCANGGGGGCGACGGCG 506
consensus_3564#1      ------------------------------------------------------------
                                                                                  

consensus_3564#0      ATTGTCCCGGTGAAACCA 524
consensus_3564#1      ------------------