cluster # 3568

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Anopheles gambiae
cluster # 3568 cluster # 3568 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3568#0 length = 611 sequences # 2

consensus_3568#1 length = 378 sequences # 1

consensusID : consensus_3568#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 611
fasta sequence

                              [CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCGGGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTGAATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTTGTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGCCTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAATCTGCCCATTGTCTCCGGGACGCGGCGGAGTGAATCGGAACTCAAGTTCCAGAAGATCGTAGACAAGAGCG]

[+] EMBL BM606337             [CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCGGGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTGAATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTTGTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGCCTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAATCTGCCCATTGTCTCCGGGACGCGGCGGAGTGAATCGGAACTCAAGTTCCAGAAGATCGTAGACAAGAGCG]
[+] EMBL AGA284994            [                                                            GGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTGAATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTTGTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGCCTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGA                                                                                                                                       ]




>consensus_3568#0
CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCG
GGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTG
AATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTT
GTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGC
CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCA
TCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCAC
CGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCA
GAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCG
CTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAA
TCTGCCCATTGTCTCCGGGACGCGGCGGAGTGAATCGGAACTCAAGTTCCAGAAGATCGT
AGACAAGAGCG

consensusID : consensus_3568#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTGCCGGCGATAACACTCACTCAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGCCAACCGACCGTCGTTGGCT]

[-] EMBL AGA283706            [CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTGCCGGCGATAACACTCACTCAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGCCAACCGACCGTCGTTGGCT]




>consensus_3568#1
CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCA
TCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCAC
CGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCA
GAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCG
CTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTGCCGGCGATAACACTCACT
CAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGCC
AACCGACCGTCGTTGGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3568#0      CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCG 60
consensus_3568#1      ------------------------------------------------------------
                                                                                  

consensus_3568#0      GGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTG 120
consensus_3568#1      ------------------------------------------------------------
                                                                                  

consensus_3568#0      AATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTT 180
consensus_3568#1      ------------------------------------------------------------
                                                                                  

consensus_3568#0      GTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGC 240
consensus_3568#1      ------------------------------------------------------------
                                                                                  

consensus_3568#0      CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCA 300
consensus_3568#1      CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCA 60
                      ************************************************************

consensus_3568#0      TCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCAC 360
consensus_3568#1      TCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCAC 120
                      ************************************************************

consensus_3568#0      CGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCA 420
consensus_3568#1      CGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCA 180
                      ************************************************************

consensus_3568#0      GAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCG 480
consensus_3568#1      GAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCG 240
                      ************************************************************

consensus_3568#0      CTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAA 540
consensus_3568#1      CTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTG-CCGGCGATAACACTCAC 299
                      ***********************************  **  * *** ** *   * * * 

consensus_3568#0      TCTGCCCA--TTGTCTCCGGGACGCGGCGGAGTGAATCG-----GAACTCAAGTTCCAGA 593
consensus_3568#1      TCAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGC 359
                      ** ***       ***** *  *    **  **   **        * *    *** ** 

consensus_3568#0      AGATCG-TAGACAAGAGCG 611
consensus_3568#1      CAACCGACCGTCGTTGGCT 378
                        * **   * *    **