cluster # 3588

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Anopheles gambiae
cluster # 3588 cluster # 3588 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3588#0 length = 590 sequences # 2

consensus_3588#1 length = 508 sequences # 1

consensusID : consensus_3588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 590
fasta sequence

                              [TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCCAACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAACTATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTCCATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTTAATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC]

[+] EMBL AGA283938            [TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCCAACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAACTATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTCCATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTG                                                                                                                                                                                                                     ]
[-] EMBL AGA285234            [                                                                                                                                                             TATTAGAATTAAATACTTCCCTCCATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTTAATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC]




>consensus_3588#0
TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCC
AACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAAC
TATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTC
CATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGC
TACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATT
TAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGT
GCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTT
AATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTT
TGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAG
ATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC

consensusID : consensus_3588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [CCGACCCCAGTGGGGCAGTTGATTATCTATCGCGGTGTTGATAATGGAATTCAATTTTCTTCTCGATGGCGTTTTTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTCGCTAATCTTGATGGGCTCTTTTACGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACATGCACAAATCGGTTATTTGTACAGTGTA]

[+] EMBL BM601017             [CCGACCCCAGTGGGGCAGTTGATTATCTATCGCGGTGTTGATAATGGAATTCAATTTTCTTCTCGATGGCGTTTTTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTCGCTAATCTTGATGGGCTCTTTTACGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAGATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACATGCACAAATCGGTTATTTGTACAGTGTA]




>consensus_3588#1
CCGACCCCAGTGGGGCAGTTGATTATCTATCGCGGTGTTGATAATGGAATTCAATTTTCT
TCTCGATGGCGTTTTTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACG
GAAAATGCGCAAGCTACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCG
GAAGGAGGAAAATTTAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGG
AGTGATTTTCCTGTGCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGA
ACTCTAGTCTCGCTAATCTTGATGGGCTCTTTTACGTTTTTTTTGTTTGTTTGATTATTT
GTTTGTACCTTTTTGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGAT
GGTTTCCAGTTAGATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACA
TGCACAAATCGGTTATTTGTACAGTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3588#0      TTTTTTTTGGGAACGCACCTGAGCGATGGACTGTACAACACATCACAAGTACCGCTAGCC 60
consensus_3588#1      ------------------------------------------------------------
                                                                                  

consensus_3588#0      AACGGGACCCAGACTGAGGCATCATCAGCGAGCCAGTTTCAAAGGACTGCTGAGCTAAAC 120
consensus_3588#1      --------------------------------CCGACCCCAGTGGG-----GCAGTTGAT 23
                                                      **     **  **      *   *  * 

consensus_3588#0      TATCAGTTGTGATACAATTGTTGCTTTCCAGCGTGTGTATTAGAATTAAATACTTCCCTC 180
consensus_3588#1      TATCTATCGCGGTGTTGATAATGGAATTCAATTTTCTTCTCG---------ATGGCGTTT 74
                      ****  * * * *     *  **   * **   *   * *           *   *  * 

consensus_3588#0      CATTAAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGC 240
consensus_3588#1      TTTTCAGACTCGTTCGGACGATTCGGCACAGCACCGACTAGAAACGGAAAATGCGCAAGC 134
                        ** *******************************************************

consensus_3588#0      TACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATT 300
consensus_3588#1      TACGCGGTGGACAGACGAAAGAAACGCGCAAACAGCGCCAGGAGCGGAAGGAGGAAAATT 194
                      ************************************************************

consensus_3588#0      TAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGT 360
consensus_3588#1      TAAAAATCCAGCAACAGATGAAAACGATAGTATTACCCACGATTGGAGTGATTTTCCTGT 254
                      ************************************************************

consensus_3588#0      GCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTAGTT 420
consensus_3588#1      GCATAGTGGTGTACGTGTTTCTGAAAACTCGCCCACGATATGAAGAACTCTAGTCTCGCT 314
                      ******************************************************** * *

consensus_3588#0      AATCTTGATGGGCCCTTTTTAAGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTT 480
consensus_3588#1      AATCTTGATGGGCTCTTTT-ACGTTTTTTTTGTTTGTTTGATTATTTGTTTGTACCTTTT 373
                      ************* ***** * **************************************

consensus_3588#0      TGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAG 540
consensus_3588#1      TGCACTGCCGGGACTCTATCGTGCAAGTGATGCAGTGTGCGTGAGATGGTTTCCAGTTAG 433
                      ************************************************************

consensus_3588#0      ATTGATACTGTATTTTTTGCGACTGATATAGCAACGTTTTAATCACATGC---------- 590
consensus_3588#1      ATTGATACTGTATGTTTTACGACTGATATAGCAACGTTTTAATCACATGCACAAATCGGT 493
                      ************* **** *******************************          

consensus_3588#0      ---------------
consensus_3588#1      TATTTGTACAGTGTA 508