cluster # 3589

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Anopheles gambiae
cluster # 3589 cluster # 3589 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3589#0 length = 599 sequences # 2

consensus_3589#1 length = 161 sequences # 1

consensusID : consensus_3589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence

                              [AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACCGGTAATGTACGATCAGATAACACACTCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCACAATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGCGAACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATCAATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACAGTTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCCGATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAAACTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGGGTATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT]

[-] EMBL BM612643             [AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX623737             [                 ATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAACGATGTACTCTACTGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCACAATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGCGAACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATCAATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACAGTTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCCGATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAAACTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGGGTATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT]




>consensus_3589#0
AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTGGGTTAA
CGATGTACTCTACCGGCTCTACGCACTACGAAACCGGTAATGTACGATCAGATAACACAC
TCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCACA
ATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGCG
AACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATCA
ATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACAG
TTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCCG
ATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAAA
CTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGGG
TATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT

consensusID : consensus_3589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTACCACCCCCCGCTTCCCCTGGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAAAA]

[+] EMBL CNS08UW5             [ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTAACGATGTACTCTACCGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTACCACCCCCCGCTTCCCCTGGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAAAA]




>consensus_3589#1
ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTAACGATGTACTCTACCGG
CTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACACTACCACCCCCCGCTTC
CCCTGGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3589#0      AAATTCTTATTCAGTTTATTTGCGATCGAGGTGATCTATTCATATGAAACAGTG-GGTTA 59
consensus_3589#1      -----------------ATTTGCGATCGTGGTGATCTATTCATATGAAACAGTGTGGTTA 43
                                       *********** ************************* *****

consensus_3589#0      ACGATGTACTCTACCGGCTCTACGCACTACGAAACCGGTAATGTACGATCAGATAACACA 119
consensus_3589#1      ACGATGTACTCTACCGGCTCTACGCACTACGAAACTAATAATGTACGATCAGATAACACA 103
                      ***********************************   **********************

consensus_3589#0      CTCCCCCCCCCCNCCCCCCCTTCCCTGGGGGTTTTGGGAGTGGGTGTGTGTGTGCCTCAC 179
consensus_3589#1      CTACCACCCCCCGCTTCCCCT----GGGGGTTTTGGGGAGTGGGTGTGTGTTTTCCTTAA 159
                      ** ** ****** *  *****     **** *** **************** * *** * 

consensus_3589#0      AATATGTTTATCTATATACACAAGATCTTCGCGACAGACTAGCTGTGCCGAAGGATACGC 239
consensus_3589#1      AA---------------------------------------------------------- 161
                      **                                                          

consensus_3589#0      GAACTAACACTTACACTAGCCAAACGCAGAGATACTAACACATGCTCTACCAATCTCATC 299
consensus_3589#1      ------------------------------------------------------------
                                                                                  

consensus_3589#0      AATTACGTAGTGTCCCCCTTCGTCCAGGACCACCGATAGGATTCGTTCAAGTTGCGTACA 359
consensus_3589#1      ------------------------------------------------------------
                                                                                  

consensus_3589#0      GTTCTAGTAAAGCACGGGTTTACACTCTAAGGTAAAGTAGCAGCATGTGAAATCTTATCC 419
consensus_3589#1      ------------------------------------------------------------
                                                                                  

consensus_3589#0      GATTAGTGGGGAGTATACACGTTCTCTAAACATATTCTACGTAGGATCAGCTTTACAAAA 479
consensus_3589#1      ------------------------------------------------------------
                                                                                  

consensus_3589#0      ACTAGTATGTTGTTCAAATCGCAGCGCTGGATTGAAATGAGTCGCGGCCTTGCGTCTCGG 539
consensus_3589#1      ------------------------------------------------------------
                                                                                  

consensus_3589#0      GTATGGCGATCGTTAGCTTCAACAGCGCTCCCCTCTCCTGCGATCTTTCTTGNCTTTGAT 599
consensus_3589#1      ------------------------------------------------------------