cluster # 3597

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Anopheles gambiae
cluster # 3597 cluster # 3597 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3597#0 length = 806 sequences # 1

consensus_3597#1 length = 545 sequences # 2

consensusID : consensus_3597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence

                              [CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGGCTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTACAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATAGATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAACCGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTCAGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCTGAAAGCCAACACAGCTCACAAAGTCATGCTGTAGAAATTAAAAAATATTATGATGGAAATGAAATGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCAAAACTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTTTTCAAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTCGTGATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCGCAATTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATCGTTCAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCCTAACAAAAAATGATGAGCTGATCCATTGA]

[+] EMBL BX622943             [CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGGCTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTACAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATAGATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAACCGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTCAGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCTGAAAGCCAACACAGCTCACAAAGTCATGCTGTAGAAATTAAAAAATATTATGATGGAAATGAAATGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCAAAACTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTTTTCAAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTCGTGATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCGCAATTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATCGTTCAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCCTAACAAAAAATGATGAGCTGATCCATTGA]




>consensus_3597#0
CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGG
CTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTA
CAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATA
GATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAAC
CGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTC
AGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCTGAAA
GCCAACACAGCTCACAAAGTCATGCTGTAGAAATTAAAAAATATTATGATGGAAATGAAA
TGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCAAAA
CTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTTTTC
AAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTCGTG
ATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCGCAA
TTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATCGTT
CAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCCTAA
CAAAAAATGATGAGCTGATCCATTGA

consensusID : consensus_3597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 545
fasta sequence

                              [TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGTTCAAAATGAAATTTCAGTTTCAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGATCAGTGTTGAAAATCATGTGGATAATATTATTGAGCGGTGAATATCAATGTTTACATTTGAAAGTGACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTGCAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGTGCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTAATACAGCTAGAAAATTATATTAAACTGAAGGACGATGCATTGGAAAAAAGTTATAAAGAGTTAAGTTGCAGAATTGAAAATTATGTACAAAACAAGGAGAAAGAAAACGAAATAAACGAAAATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTCTGGTGTATATAAAATACAACCTGA]

[+] EMBL AGA284232            [TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGTTCAAAATGAAATTTCAGTTTCAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGATCAGTGTTGAAAATCATGTGGATAATATTATTGAGCGGTGAATATCAATGTTTACATTTGAAAGTGACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTGCAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGTGCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTAATACAGCTAGAAAATTATAT                                                                                                                                                                     ]
[+] EMBL BX602760             [                                                                                                                                                                                                                        AGTGTTATCAACATGTGCAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGTGCCGAAACATCGAGTGATGTAAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTAATACAGCTAGAAGATCATATTAAACTGAAGGACGATGCATTGGAAAAAAGTTATAAAGAGTTAAGTTGCAGAATTGAAAATTATGTACAAAACAAGGAGAAAGAAAACGAAATAAACGAAAATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTCTGGTGTATATAAAATACAACCTGA]




>consensus_3597#1
TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGTTCAAAATGAAATTTCAGTTT
CAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGATCAGTG
TTGAAAATCATGTGGATAATATTATTGAGCGGTGAATATCAATGTTTACATTTGAAAGTG
ACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTGCAAGTTA
AATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGACCCAAGT
GCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCGTTTGAAATGATCATGACAAAACTA
ATACAGCTAGAAAATTATATTAAACTGAAGGACGATGCATTGGAAAAAAGTTATAAAGAG
TTAAGTTGCAGAATTGAAAATTATGTACAAAACAAGGAGAAAGAAAACGAAATAAACGAA
AATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTCTGGTGTATATAAAATACAA
CCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3597#0      CAGAGGAGATTCGAATCCAGCTGCTCTGAACGAATACAGATTTAATTGGTTCCGAAATGG 60
consensus_3597#1      ------------------------------------------------------------
                                                                                  

consensus_3597#0      CTCCAATTGAATCCGTTTCACTACCGTACTCAATTCGTAGAGCAAAATACTTATACACTA 120
consensus_3597#1      ------------------------------------------------------------
                                                                                  

consensus_3597#0      CAAAAGCAAGCTTGCAAGCAACCCTTGCTGTATTCATAACTACACGTATAAGCAAAAATA 180
consensus_3597#1      ------------------------------------------------------------
                                                                                  

consensus_3597#0      GATCTATGCTGAATTACAGGGTTTCACAAGTCAGTTTCGAATGTAATCATTTTTATTAAC 240
consensus_3597#1      ------------------------------------------------------------
                                                                                  

consensus_3597#0      CGCACCCAAGATGTATTTCAACAGCTGTCAAATGGTTTATTTGTATCAAAATGAAATTTC 300
consensus_3597#1      ----TTTTTTTTGGTTTTCAACAGCTGTCAAATGGTTTATTTGT-TCAAAATGAAATTTC 55
                                 **  ***************************** ***************

consensus_3597#0      AGTTTTAACACGTTATTTTCAACACATAACAAAGAACTGTCAAACTCATTCCAGCT-GAA 359
consensus_3597#1      AGTTTCAACACATGAATTCCAACACATTGCAAAGAACTAACAAGCTCAATTCAGCTTGAT 115
                      ***** ***** * * ** ********  *********  *** **** * ***** ** 

consensus_3597#0      AGCCAACACAGCTCACAAAG-TCATGCTGTAGAAATTAAAAAATATTA-TGATGGAAATG 417
consensus_3597#1      CAGTGTTGAAAATCATGTGGATAATATTATTGAG--CGGTGAATATCAATGTTTACATTT 173
                               *  ***    * * **  * * **        ***** * ** *   * * 

consensus_3597#0      AAATGTCATATCGATCTGAAACAACATTTTGTACGCGGTGAATAACAATTTTTACATTCA 477
consensus_3597#1      GAAAGTGACTTGGAAAACCCTTTAAGTTTTGTATGGTGTGATCAGTGTTATCAACATGTG 233
                       ** ** *  * **         *  ******* *  ****  *    * *  ****   

consensus_3597#0      AAACTGACTTGGAAAACCTTGTATTTATGTGCGTACCAGCAAAACCCGTTTACTGGATTT 537
consensus_3597#1      CAAGTTAAATTTGCTGGTTCATTTTGCTCTGTTTTGCACAACGGTCGGTGTGCAATGTGA 293
                       ** * *  *        *  * **  * **  *  **  *    * ** * *    *  

consensus_3597#0      TTCAAGGTGTTCTAGTTGTTTCCAGATTTTCGGCAGTTTTGCCGAGTTTTGATAAATCTC 597
consensus_3597#1      CCCAAGTGCCGAAACATCGAGTGATGTTAAAGGAGGTTTTGCG----TTTGA-AATGATC 348
                        ****       *  *      *  **   **  *******     ***** **   **

consensus_3597#0      GTGATTTATGGTTTGTTTCTCTATACTAACACTTTCCTGCATATGCTTTACCCGTTCCCG 657
consensus_3597#1      ATGACAAAACTAATACAGCTAGAAAATTATATTAAACTGAA---GGACGATGCATTG--G 403
                       ***   *     *    **  * * * * * *   *** *   *    *  * **   *

consensus_3597#0      CAATTAGTTGGCATTATCTAAATATTTTTTAAACAAATAATTCAAACAATTTAGAGCATC 717
consensus_3597#1      AAAAAAGTTATAAAGAGTTAAGT--TGCAGAATTGAAAATTATGTACAAAACAAGGAGAA 461
                       **  ****   *  *  *** *  *    **   ** * *    ****   *  *    

consensus_3597#0      GTTCAATACCTTGNTGAATAGTTTAAATAAATTAATTGAATTCAAATAATTTCTGGATCC 777
consensus_3597#1      AGAAAACGAAATAAACGAAAATGTTTATAAATCTTGCAATGCTGCACCATTTGCTTCTTC 521
                          **     *     * * * *  ******      *      *  ****     * *

consensus_3597#0      TAACAAA---AAATGATGAGCTGATCCATTGA 806
consensus_3597#1      TGGTGTATATAAAATACAACCTGA-------- 545
                      *     *   ***  *  * ****