cluster # 3605

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Anopheles gambiae
cluster # 3605 cluster # 3605 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3605#0 length = 677 sequences # 2

consensus_3605#1 length = 676 sequences # 1

consensusID : consensus_3605#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence

                              [CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGCTCCAGTACCTGCCGGAGCTGGTTGTGGCCAACCGGGACAAGATACTGCCGCAGTTTTTGGACATGATTTCGAAGCTG]

[+] EMBL BM606891             [CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGCTCCAGTACCTGCCGGAGCTGGTTGTGGCCAACCGGGACAAGATACTGCCGCAGTTTTTGGACATGATTTCGAAGCTG]
[+] EMBL BM612968             [                        ccgCTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGCTCCAGTACCTGC                                                                 ]




>consensus_3605#0
CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGG
AATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAG
AAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAA
CAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCA
ACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGC
TCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAA
TGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGTCAAAGACGTCTCCAGCCTTTCCA
TCGACATTGAGCACGATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCG
CTTGTGGGCAGTCCGTGATGGTTCCGTTCTATGAGGTGCTGTTGTCCTTTCTGCGCTGCA
GCATGACCCACATTCAGTCGCGAATCCAGGAAGATTCGCTCCTGCTGCTGGATGTACTGC
TCCAGTACCTGCCGGAGCTGGTTGTGGCCAACCGGGACAAGATACTGCCGCAGTTTTTGG
ACATGATTTCGAAGCTG

consensusID : consensus_3605#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGCGGACGCGTGGGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGCAGCACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCCTTGTGGGCAGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCTGGATGTACTGCTCCAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACTGGCCCGCAGTTTTTGGACATGATTTCGAA]

[+] EMBL BM581747             [CCGCGGACGCGTGGGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGCAGCACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCCTTGTGGGCAGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGACCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCTGGATGTACTGCTCCAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACTGGCCCGCAGTTTTTGGACATGATTTCGAA]




>consensus_3605#1
CCGCGGACGCGTGGGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGGAATTTCCTCAAAA
AGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAGAAAAATCCAAGAT
CAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAACAAACTTCAAAGT
GCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCAACGCAGCGGTACT
GTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGCTCAACAATGTGTC
GTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAATGCCGTCGGAGCT
GCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCCATCGACATTGCAG
CACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGGCCGCCTTGTGGGC
AGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTGCGCTGCAGCATGA
CCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCTGGATGTACTGCTC
CAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACTGGCCCGCAGTTTT
TGGACATGATTTCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3605#0      CCGGGTTTGTTTACTTGCATTCGTACACTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGG 60
consensus_3605#1      ------------CCGCGGACGCGTG-GGTTGCCGGTGTTGCAGGTTTTCGTTTCGGTTGG 47
                                   *  * *  ***    ********************************

consensus_3605#0      AATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAG 120
consensus_3605#1      AATTTCCTCAAAAAGTAGCCGTAAAAATGGGTGGAAGCTCGAAAAAGTTCAAAAAAGCAG 107
                      ************************************************************

consensus_3605#0      AAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAA 180
consensus_3605#1      AAAAATCCAAGATCAAACTAAAGGGAGCCAAACTCCCGAAAGGTGCCAATGTGACGAAAA 167
                      ************************************************************

consensus_3605#0      CAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCA 240
consensus_3605#1      CAAACTTCAAAGTGCGCAAAATAGTCGTACCGGATCAGCTGAAGCAGCGTAATCTGACCA 227
                      ************************************************************

consensus_3605#0      ACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGC 300
consensus_3605#1      ACGCAGCGGTACTGTCCAACAAAAACTTAACCCTGAAGGATTGCCTCGCCAAACTGAAGC 287
                      ************************************************************

consensus_3605#0      TCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAA 360
consensus_3605#1      TCAACAATGTGTCGTCCAAAATCGAAGGACTGCGCGGAGTGCGAGAAATCATCACGAAAA 347
                      ************************************************************

consensus_3605#0      TGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGG-TCAAAGACGTCTCCAGCCTTTCC 419
consensus_3605#1      TGCCGTCGGAGCTGCACCGGATGCTCAGCTCGGTGGGTCAAAGACGTCTCCAGCCTTTCC 407
                      ************************************ ***********************

consensus_3605#0      ATCGACATTG-AGCACGA-TGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGG 477
consensus_3605#1      ATCGACATTGCAGCACGAATGTGCGGAGGGACGCGTACAAAACGCTCGGATGCATACTGG 467
                      ********** ******* *****************************************

consensus_3605#0      CCGC-TTGTGGGCAGTCCGTG-ATGGTTCCG-TTCTATGA-GGTGCTGTTGTCCTTTCTG 533
consensus_3605#1      CCGCCTTGTGGGCAGTCCGTGGATGGTTCCGGTTCTATGAAGGTGCTGTTGTCCTTTCTG 527
                      **** **************** ********* ******** *******************

consensus_3605#0      CGCTGCAGCATGACCC-ACATTCAGTCGCGAA--TCCAGGAAGATTCGCTCCTG-CTGCT 589
consensus_3605#1      CGCTGCAGCATGACCCCACATTCAGTCGCGAAATTCCAGGAAGATTCGCTCCTGGCTGCT 587
                      **************** ***************  ******************** *****

consensus_3605#0      GGATGTACTGCTCCAGTACCTGCCGG--AGCTGGTTGTGGCCAACCGGGACA-AGATACT 646
consensus_3605#1      GGATGTACTGCTCCAGTACCTGCCGGGAAGCTGGTTGTGGCCAACCGGGACAGAAAAACT 647
                      **************************  ************************ * * ***

consensus_3605#0      G--CCGCAGTTTTTGGACATGATTTCGAAGCTG 677
consensus_3605#1      GGCCCGCAGTTTTTGGACATGATTTCGAA---- 676
                      *  **************************