cluster # 3614

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Anopheles gambiae
cluster # 3614 cluster # 3614 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3614#0 length = 712 sequences # 2

consensus_3614#1 length = 676 sequences # 1

consensusID : consensus_3614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 712
fasta sequence

                              [CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTACCCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTTTTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTTTTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTACACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGCCCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCCCCTTTATGTGTGTGTGTGTATTTTTTCGCCTTTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCTCTCTCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTATTGAACTATAAAATCGTACGATGCCTTCGCCTTTTGCCTAATGCTTCTTCTACATGGATGGGTGTACATGGTGTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACA]

[+] EMBL BM642172             [CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTACCCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTTTTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTTTTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTACACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGCCCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCCCCTTTATGTGT                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AGA284669            [                                                                                                                                                                                                                                                                 ATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGCCCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCCCCTTTATGTGTGTGTGTGTATTTTTTCGCCTTTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCTCTCTCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTATTGAACTATAAAATCGTACGATGCCTTCGCCTTTTGCCTAATGCTTCTTCTACATGGATGGGTGTACATGGTGTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACA]




>consensus_3614#0
CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTAC
CCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTT
TTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTT
TTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTAC
ACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGC
CCACTCGTTCTCGCTATGATTATGATCAATTCGTCTCACGGTCTAGAATGGCTGCTCTCC
CCTTTATGTGTGTGTGTGTATTTTTTCGCCTTTTAATGTGTATACATATATAAATCTTCG
AGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCTCTCTCTGCGCGT
GTATTTGATCGACGGTAAAAAGCTAAAGTATTGAACTATAAAATCGTACGATGCCTTCGC
CTTTTGCCTAATGCTTCTTCTACATGGATGGGTGTACATGGTGTGGTCGGCTGCACACGT
TTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTT
ATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACA

consensusID : consensus_3614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [GTGAGCGGGATTGTTTTCTGTATCNTTCGNTTTNTTGCCCACTCGTTGCGTGCGNNATGATTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGCTGCTNCTCCNCCTGTGAAGGTGTGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCCCTCTGCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATCGTACGATGCCTTCGCCTGTGGTGCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGTNTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACATACTAATCTGCTAATTCATTCCTCGATCGTATCAGTACATACACAGTTTAGCGTGTACTAAACGTATGATTTATATTATTACCATGGATGGGGTACAATAAAATAATAAAATTAAATACANTACAAAAACGCTTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTTGTGTCGTGTTGTGGAAGGAGAGANAAGCCTCGGGCATT]

[-] EMBL AL931895             [GTGAGCGGGATTGTTTTCTGTATCNTTCGNTTTNTTGCCCACTCGTTGCGTGCGNNATGATTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGCTGCTNCTCCNCCTGTGAAGGTGTGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACATATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCCCTCTGCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATCGTACGATGCCTTCGCCTGTGGTGCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGTNTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACATACTAATCTGCTAATTCATTCCTCGATCGTATCAGTACATACACAGTTTAGCGTGTACTAAACGTATGATTTATATTATTACCATGGATGGGGTACAATAAAATAATAAAATTAAATACANTACAAAAACGCTTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTTGTGTCGTGTTGTGGAAGGAGAGANAAGCCTCGGGCATT]




>consensus_3614#1
GTGAGCGGGATTGTTTTCTGTATCNTTCGNTTTNTTGCCCACTCGTTGCGTGCGNNATGA
TTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGCTGCTNCTCCNCCTGTGAAGGTG
TGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACATATATAAATCTTCGAGCCTAAAT
GATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATCCCTCTGCTGCGCGTGTATTTGA
TCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATCGTACGATGCCTTCGCCTGTGGT
GCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGTNTGGTCGGCTGCACACGTTTCT
ATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTGTGTTGTGTACACTGTGTTATGT
GGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAAATTTATTACATACTAATCTGCT
AATTCATTCCTCGATCGTATCAGTACATACACAGTTTAGCGTGTACTAAACGTATGATTT
ATATTATTACCATGGATGGGGTACAATAAAATAATAAAATTAAATACANTACAAAAACGC
TTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTTGTGTCGTGTTGTGGAAGGAGAG
ANAAGCCTCGGGCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3614#0      CCGTCTGGATCCATGACCATCCTTTTCCTTTTCCGGCAGCATTTCCAGCTTTCTTTCTAC 60
consensus_3614#1      ------------------------------------------------------------
                                                                                  

consensus_3614#0      CCGCCACTTTCCACTTTCTGCTGCTCTGGTTGTGTTGTTCTTGATTGATTTGATAGAGTT 120
consensus_3614#1      ------------------------------------------------------------
                                                                                  

consensus_3614#0      TTGTTCCATTTTTCTTCTATTTGTGTCGTTCTACTAAATATGCCTCCATGATTTTCCTTT 180
consensus_3614#1      ------------------------------------------------------------
                                                                                  

consensus_3614#0      TTCTAGATAGAAACACTATTAATTTGCTTCTTACTTCATTTTTGCAAAACAAAATTGTAC 240
consensus_3614#1      ------------------------------------------------------------
                                                                                  

consensus_3614#0      ACGGGGTCACGATTTTCATCACTACTCAGCTACGGTATTTTTTCTCTATCCTCTTTTTGC 300
consensus_3614#1      ---------------------GTGAGCGGG-ATTGTTTTCTGTATCNTTCGNTTTNTTGC 38
                                            *   * *  *  ** ** * * **  **   ** ****

consensus_3614#0      CCACTCGTTCT---CGCTATGATTATGATC-AATTCGTC--TCACGGTCTAG--AATGGC 352
consensus_3614#1      CCACTCGTTGCGTGCGNNATGATTAGGATCCAATTCGGTCGTCACGGTCTAGTGATGGGC 98
                      *********     **  ******* **** ******    ***********  *  ***

consensus_3614#0      TGCTCTCCCCTTTATG----TGTGTGTGTGTATTT-TTTCGCCTTTTAATGTGTATACAT 407
consensus_3614#1      TGCTNCTCCNCCTGTGAAGGTGTGTGTGTGTAGTGGTTNCGCCGNTTAATGTGTATACAT 158
                      ****   **   * **    ************ *  ** ****  ***************

consensus_3614#0      ATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATC 467
consensus_3614#1      ATATAAATCTTCGAGCCTAAATGATGCACCACCTTTGCACAGGCTCTTGCGCTCTCTATC 218
                      ************************************************************

consensus_3614#0      TCTCT-CTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTA-TTGAACTATAAAATC 525
consensus_3614#1      CCTCTGCTGCGCGTGTATTTGATCGACGGTAAAAAGCTAAAGTACTTGAACTATAAAATC 278
                       **** ************************************** ***************

consensus_3614#0      GTACGATGCCTTCGCCTTT--TGCCTAATGCTT-CTTCTACATGGATGGGTGTACATGGT 582
consensus_3614#1      GTACGATGCCTTCGCCTGTGGTGCCTAATGCTTGCTTCTACATGGATGGGTGTACATGGT 338
                      ***************** *  ************ **************************

consensus_3614#0      GTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTG 642
consensus_3614#1      NTGGTCGGCTGCACACGTTTCTATCGTGTGTATATGTGTGTGTGTGTTTAATACGTTTTG 398
                       ***********************************************************

consensus_3614#0      TGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAA 702
consensus_3614#1      TGTTGTGTACACTGTGTTATGTGGCTGCTGTCGTTTTGCGTTTGCTTTACGCGATTACAA 458
                      ************************************************************

consensus_3614#0      ATTTATTACA-------------------------------------------------- 712
consensus_3614#1      ATTTATTACATACTAATCTGCTAATTCATTCCTCGATCGTATCAGTACATACACAGTTTA 518
                      **********                                                  

consensus_3614#0      ------------------------------------------------------------
consensus_3614#1      GCGTGTACTAAACGTATGATTTATATTATTACCATGGATGGGGTACAATAAAATAATAAA 578
                                                                                  

consensus_3614#0      ------------------------------------------------------------
consensus_3614#1      ATTAAATACANTACAAAAACGCTTCTTATTGCAACCATACGTGTGTGTGTGTGTGTGTTT 638
                                                                                  

consensus_3614#0      --------------------------------------
consensus_3614#1      GTGTCGTGTTGTGGAAGGAGAGANAAGCCTCGGGCATT 676