cluster # 3617

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Anopheles gambiae
cluster # 3617 cluster # 3617 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3617#0 length = 538 sequences # 2

consensus_3617#1 length = 477 sequences # 1

consensusID : consensus_3617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 538
fasta sequence

                              [CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTATTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTTTAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGCTCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGAAGCTCACTAGTGTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG]

[+] EMBL BM644109             [CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTATTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTTTAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGCTCTGTGTGTATGTGGTACTAGCGATG                                                                                            ]
[+] EMBL AGA284802            [                                                                                                                                    CCTTACGATCAAATAGAGTTCCTTTATCTTATTTTTTCCACATTTTACAGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTATTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTTTAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGCTCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGAAGCTCACTAGTGTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG]




>consensus_3617#0
CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTT
AAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCT
AACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTAC
AGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCT
CTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTA
TTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTT
TAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGC
TCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGAAGCTCACTAGT
GTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG

consensusID : consensus_3617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [TTTTTTTTGTTTTTTTTTTTCTTTTTTTATTGATGTATTGTTTTTTTTGCTGTGGCTGATTTGCTTACACACTATCGATAAATCAAGTTAAATTCAGTACCATCAACGGGTCTAGAAAAACTGATCATCTACCCCACCGCGACAAGGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTTTTTGTTTCGGGAGAGTGTTTCAAGTGTATGGATGAAACTCTACGATTCTAGAAGTTTAATTAACCGATTCTAGAAGTTTAATTCTCGCCTTCTCTGGTGTTCCGAGTGTCCCCCTGCCCGTGGCTCTACCTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGA]

[-] EMBL BX608946             [TTTTTTTTGTTTTTTTTTTTCTTTTTTTATTGATGTATTGTTTTTTTTGCTGTGGCTGATTTGCTTACACACTATCGATAAATCAAGTTAAATTCAGTACCATCAACGGGTCTAGAAAAACTGATCATCTACCCCACCGCGACAAGGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTTTTTGTTTCGGGAGAGTGTTTCAAGTGTATGGATGAAACTCTACGATTCTAGAAGTTTAATTAACCGATTCTAGAAGTTTAATTCTCGCCTTCTCTGGTGTTCCGAGTGTCCCCCTGCCCGTGGCTCTACCTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGA]




>consensus_3617#1
TTTTTTTTGTTTTTTTTTTTCTTTTTTTATTGATGTATTGTTTTTTTTGCTGTGGCTGAT
TTGCTTACACACTATCGATAAATCAAGTTAAATTCAGTACCATCAACGGGTCTAGAAAAA
CTGATCATCTACCCCACCGCGACAAGGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTT
TTTGTTTCGGGAGAGTGTTTCAAGTGTATGGATGAAACTCTACGATTCTAGAAGTTTAAT
TAACCGATTCTAGAAGTTTAATTCTCGCCTTCTCTGGTGTTCCGAGTGTCCCCCTGCCCG
TGGCTCTACCTTTTTTTTTGTTTCATTTCCAGCCTTGTTAAGCCCGGAAAACATCACCCT
CTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCTAACCGATTAAGCCCTTACGAT
CAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTACAGCCTCCAAACAACACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3617#0      CCGAGTTCAGATCGGAGCGGCGCCCTTTTTTTTTTTTTTTGTTTCATTTCCAGCCTTGTT 60
consensus_3617#1      --------------------------------TTTTTTTTGTTTTTTTTTTTCTTTTTTT 28
                                                      ************  ***      ** **

consensus_3617#0      AAGCCCGGAAAACATCACCCTCTCCACTCGCTGCACTTTCGTTCCCATTGACATACTGCT 120
consensus_3617#1      AT-----TGATGTATTGTTTTTTTTGCT-GTGGCTGATTTGCTT------ACACACTATC 76
                      *        *   **     * *   ** *  **   ** * *       *** ***   

consensus_3617#0      AACCGATTAAGCCCTTACGATCAAATATACTTTTTTTATCTTATTTTTTCCTCATTTTAC 180
consensus_3617#1      GATAAATCAAG---TTA-AATTCAGTACCATCAACGGGTCTAGAAAAACTGATCATCTAC 132
                       *   ** ***   ***  **  * **   *       ***              * ***

consensus_3617#0      AGCCTCCAAACAACACGAAGCACACAGTTTTCAGTGTTTTCTTTCTCTCTCTCTCTCTCT 240
consensus_3617#1      CCCACCGCGACAA-GGGTTCAGCGCAGCGGAGAACGTTTTTTTTTTGTTTTTGTTTCGGG 191
                        *  *   ****   *     * ***     *  ***** *** * * * * * **   

consensus_3617#0      CTCTCTCTTCTCCTATCTTCTATCGTCACTCGTTATTTGCCTCCTTCGGAAACTCCCGTA 300
consensus_3617#1      AGAGTGTTTCAAGTGTAT---------GGATGAAACTCTACGATTCTAGAAGTTTAATTA 242
                             ***   * * *             *  * *   *   *   ***  *    **

consensus_3617#0      TTTTTTTATACACCTTCTTTTCCAGCTATGCTACACTACATCGAACGAAATGATAAAGTT 360
consensus_3617#1      ACCGATTCTAGAAGTTTAATTCTCGCCTT-CTCTGGTGTTCCGAGTGTCCCCCTGCC-CG 300
                           ** ** *  **   ***  **  * **    *    ***  *      *      

consensus_3617#0      TAACTGTTTCTTGCACTACGTACATACCCTTCTCCCAGCACAACGCAAAAGAAATCTGGC 420
consensus_3617#1      TGGCTCTACCTTTTTTTTTGTTT-CATTTCCAGCCTTGTTAAGCCCGGAAAACATC--AC 357
                      *  ** *  ***    *  **    *       **  *   * * *  ** * ***   *

consensus_3617#0      TCTGTGTGTATGTGGTACTAGCGATGCAACGGGATGCATTGGAAAACGA--AGCTCACTA 478
consensus_3617#1      CCTCTCCACTCGCTGCACTTTCGTTCCCATTG-ACATACTGCTAACCGATTAAGCCCTTA 416
                       ** *      *  * ***  ** * * *  * *   * **  ** ***  *   *  **

consensus_3617#0      GTGTAAAACGGGATTAGTTTTAATCATCTGAGTAAGGGTCCCACATTAGCGATATATAAG 538
consensus_3617#1      CGATCAAATATACTTTTTTTATCTTATTTTT-TCCTCATTTTACAGCCTCCAAACAACAC 475
                         * ***     **  ***   * ** *   *     *   ***    * * * *  * 

consensus_3617#0      --
consensus_3617#1      GA 477