cluster # 3618

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Anopheles gambiae
cluster # 3618 cluster # 3618 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3618#0 length = 852 sequences # 2

consensus_3618#1 length = 305 sequences # 1

consensusID : consensus_3618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 852
fasta sequence

                              [CCGATGAACGTGTGTTATACAAATAATTATGTAGTAAAGTTAGAGCAAACAAATGCTACAACTCATGTTGTTAAGTTTTGACATAAGTTCAATCGTGCAAGGGCCGGACATCGGGATTATTATTTCATCGCCGGCAATATAACCGTTTATACATTCAAAGAACGTTTCTAACAGTTGCTGTGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTCGCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAACCGCCATCGCATTTTAATTGATAAAGTTCAATCACATCTCTTGCCGGACCGAAATGTGTGACACAAAGCGAATATAAACGAAGTCGAAATCAAAGTAGTACTGAAACCAAACTCGATCGAACCTTTATTATCAACATCTAATCGTGTGGATGATGATCGCATTGGCTTGACGAACTACAAGTGTTACTTCCCTTTGAAACGTTATGCAAGTGTGAAAAAGTGAAGCATTTTTCGTTGTTGATTTCGACTGGCTCGCGTGACGCTAGTGAAAAGAAAATCTTTGCCAATCGAGGTCGCGTCATCACTGACGGATATCGTGCAGCGGTGGTGCGGTGATTTCTGTCGTG-AAAAAAAAATCGCCAACACCAAACAGCTACAGTACATCGCGACCAGTTGGCAACAGTATGATCAATCAAAAAGCCCCGCTGGAAGATGGCAGAACATCCAAAGAAAAGCCGCAATACAGTGAGCTGTCGTATCTCGTCACTCGGCAATGTCTTCAGAGAGAAGACTTTAATCAGCTTTCACAGTACGAAAGGCTAAAGCCTACTGCTCTTGATTCAATAGGAGCCT]

[+] EMBL BM649022             [CCGATGAACGTGTGTTATACAAATAATTATGTAGTAAAGTTAGAGCAAACAAATGCTACAACTCATGTTGTTAAGTTTTGACATAAGTTCAATCGTGCAAGGGCCGGACATCGGGATTATTATTTCATCGCCGGCAATATAACCGTTTATACATTCAAAGAACGTTTCTAACAGTTGCTGTGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTCGCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAACCGCCATCGCATTTTAATTGATAAAGTTCAATCACATCTCTTGCCGGACCGAAATGTGTGACACAAAGCGAATATAAACGAAGTCGAAATCAAAGTAGTACTGAAACCAAACTCGATCGAACCTTTATTATCAACATCTAATCGTGTGGATGATGATCGCATTGGCTTGACGAACTACAAGTGTTACTTCCCTTTGAAACGTTATGCAAGTGTGAAAAAGTGAAGCATTTTTCGTTGTTGATTTCGACTGGCTCGCGTGACGCTAGTGAAAAGAAAATCTTTGCCAATCGAGGTCGCGTCATCACTGACGGATATCGTGCAGCGGTGGTGCGGTGATTTCTGTCGTG AAAAAAAAATCGCCAACACCAAACAGCTACAGTACATCGCGACCAGTTGGCAACAGTAT                                                                                                                                                                       ]
[+] EMBL BM606176             [                                                                                                                                                                         ccgAGTTGCTGTGTCAATAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTCGCCAACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAACCGCCATCGCATTTTAATTGATAAAGTTCAATCACATCTCTTGCTGGACCGAAATGTGTGACACAAAGCGAATATAAACGAAGTCGAAATCAAAGTAGTACTGAAACCAAACTCGATCGAACCTTTATTATCAACATCTAATCGTGTGGATGATGATCGCATTGGGTTGACGAACTACAAGTGTTACTTCCCTTTGAAACGTTATGCAAGTGTGAAAAAGTGAAGCATTTTTCGTTGTTGATTTCGACTGGCTCGCGTGACGCTAGTGAAAAGAAAATCGTTGCCAATCGAGGTCGCGTCATCACTGACGGATATCGTGCAGCGGTGGTGCGGTGATTTCTGTCGTGAAAAAAAAAATCGCCAACACCAAACAGCTACAGTACATCGCGACCAGTTGGCAACAGTATGATCAATCAAAAAGCCCCGCTGGAAGATGGCAGAACATCCAAAGAAAAGCCGCAATACAGTGAGCTGTCGTATCTCGTCACTCGGCAATGTCTTCAGAGAGAAGACTTTAATCAGCTTTCACAGTACGAAAGGCTAAAGCCTACTGCTCTTGATTCAATAGGAGCCT]




>consensus_3618#0
CCGATGAACGTGTGTTATACAAATAATTATGTAGTAAAGTTAGAGCAAACAAATGCTACA
ACTCATGTTGTTAAGTTTTGACATAAGTTCAATCGTGCAAGGGCCGGACATCGGGATTAT
TATTTCATCGCCGGCAATATAACCGTTTATACATTCAAAGAACGTTTCTAACAGTTGCTG
TGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTC
GCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAACCGCCATCGCATTTTAATTGA
TAAAGTTCAATCACATCTCTTGCCGGACCGAAATGTGTGACACAAAGCGAATATAAACGA
AGTCGAAATCAAAGTAGTACTGAAACCAAACTCGATCGAACCTTTATTATCAACATCTAA
TCGTGTGGATGATGATCGCATTGGCTTGACGAACTACAAGTGTTACTTCCCTTTGAAACG
TTATGCAAGTGTGAAAAAGTGAAGCATTTTTCGTTGTTGATTTCGACTGGCTCGCGTGAC
GCTAGTGAAAAGAAAATCTTTGCCAATCGAGGTCGCGTCATCACTGACGGATATCGTGCA
GCGGTGGTGCGGTGATTTCTGTCGTGAAAAAAAAATCGCCAACACCAAACAGCTACAGTA
CATCGCGACCAGTTGGCAACAGTATGATCAATCAAAAAGCCCCGCTGGAAGATGGCAGAA
CATCCAAAGAAAAGCCGCAATACAGTGAGCTGTCGTATCTCGTCACTCGGCAATGTCTTC
AGAGAGAAGACTTTAATCAGCTTTCACAGTACGAAAGGCTAAAGCCTACTGCTCTTGATT
CAATAGGAGCCT

consensusID : consensus_3618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [CACTGTATTCCGTTGGAGCCGCATCTTTTAGCACGTTAACACATACAGAGAGAGAGAGCTGGGGAGAGAGATTGGTGACCTCACTGTGCCTCTCGAGATGGGCCTCTCAACAAATGATTGTATACAACGCGATTTCATTTCGTTTTTCAGAACGTTTCTAACAGTTGCTGTGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTCGCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAATCGCCATCGCATTTTAATTGATAAAGTTCAATCACA]

[+] EMBL AGA284808            [CACTGTATTCCGTTGGAGCCGCATCTTTTAGCACGTTAACACATACAGAGAGAGAGAGCTGGGGAGAGAGATTGGTGACCTCACTGTGCCTCTCGAGATGGGCCTCTCAACAAATGATTGTATACAACGCGATTTCATTTCGTTTTTCAGAACGTTTCTAACAGTTGCTGTGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTCGCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAATCGCCATCGCATTTTAATTGATAAAGTTCAATCACA]




>consensus_3618#1
CACTGTATTCCGTTGGAGCCGCATCTTTTAGCACGTTAACACATACAGAGAGAGAGAGCT
GGGGAGAGAGATTGGTGACCTCACTGTGCCTCTCGAGATGGGCCTCTCAACAAATGATTG
TATACAACGCGATTTCATTTCGTTTTTCAGAACGTTTCTAACAGTTGCTGTGTCAGTAGC
CAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCTCGCCGACTGAG
CAAGAACTGCTCAGTTTGGCTCCAATTAATCGCCATCGCATTTTAATTGATAAAGTTCAA
TCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3618#0      CCGATGAACGTGTGTTATACAAATAATTATGTAGTAAAGTTAGAGCAAACAAATGCTACA 60
consensus_3618#1      -CACTGTAT-TCCGTTGGAGCCGCA-TCTTTTAGCAC-GTTAACACATACAGAGAGAGAG 56
                       *  ** *  *  ***  *     * *  * *** *  ****   ** *** *       

consensus_3618#0      ACTCATGTTGTTAAGTTT-TGACATAAGTTCAATCGTGCAAGGGCCGGACATCGGGATTA 119
consensus_3618#1      AGCTGGGGAGAGAGATTGGTGACCTCACT---GTGCCTCTCGAGATGGGCCTC----TCA 109
                      *     *  *  *  **  **** * * *    *    *  * *  ** * **    * *

consensus_3618#0      TTATTTCATCGCCGGCAATATAACCGTTTATACATTCAAAGAACGTTTCTAACAGTTGCT 179
consensus_3618#1      ACAAATGATTGTATACAACGCGATTTCATTTCGTTTTTCAGAACGTTTCTAACAGTTGCT 169
                        *  * ** *    ***    *     * *   **   *********************

consensus_3618#0      GTGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCT 239
consensus_3618#1      GTGTCAGTAGCCAGCTGATCGTCGTCAGAAATCAGAATTTTAACTGGAACATCGCTACCT 229
                      ************************************************************

consensus_3618#0      CGCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAACCGCCATCGCATTTTAATTG 299
consensus_3618#1      CGCCGACTGAGCAAGAACTGCTCAGTTTGGCTCCAATTAATCGCCATCGCATTTTAATTG 289
                      **************************************** *******************

consensus_3618#0      ATAAAGTTCAATCACATCTCTTGCCGGACCGAAATGTGTGACACAAAGCGAATATAAACG 359
consensus_3618#1      ATAAAGTTCAATCACA-------------------------------------------- 305
                      ****************                                            

consensus_3618#0      AAGTCGAAATCAAAGTAGTACTGAAACCAAACTCGATCGAACCTTTATTATCAACATCTA 419
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      ATCGTGTGGATGATGATCGCATTGGCTTGACGAACTACAAGTGTTACTTCCCTTTGAAAC 479
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      GTTATGCAAGTGTGAAAAAGTGAAGCATTTTTCGTTGTTGATTTCGACTGGCTCGCGTGA 539
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      CGCTAGTGAAAAGAAAATCTTTGCCAATCGAGGTCGCGTCATCACTGACGGATATCGTGC 599
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      AGCGGTGGTGCGGTGATTTCTGTCGTGAAAAAAAAATCGCCAACACCAAACAGCTACAGT 659
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      ACATCGCGACCAGTTGGCAACAGTATGATCAATCAAAAAGCCCCGCTGGAAGATGGCAGA 719
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      ACATCCAAAGAAAAGCCGCAATACAGTGAGCTGTCGTATCTCGTCACTCGGCAATGTCTT 779
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      CAGAGAGAAGACTTTAATCAGCTTTCACAGTACGAAAGGCTAAAGCCTACTGCTCTTGAT 839
consensus_3618#1      ------------------------------------------------------------
                                                                                  

consensus_3618#0      TCAATAGGAGCCT 852
consensus_3618#1      -------------