cluster # 3620

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Anopheles gambiae
cluster # 3620 cluster # 3620 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3620#0 length = 589 sequences # 1

consensus_3620#1 length = 549 sequences # 2

consensusID : consensus_3620#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATATAAGTACTGCAATTGAAAAAAAAACTAAACAAGAACACTTCATAGTTTCAAGATGTAAGCAAAAGAAGGAAAAACCCTAATTAAAATGTCTAAGGCTGGCAAAGAAAAGAAGAACCGGTCTCTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGATAATCAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAATAAAGTAAAGTGTCCCACAAGTAAAGCAAATAGATAAGATAAGAAAGTAAAAGGTTATTTGTAATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCGGCTGTTTTACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCAGATTTGCATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNTTACACGCATTTGG]

[+] EMBL BX620379             [AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATATAAGTACTGCAATTGAAAAAAAAACTAAACAAGAACACTTCATAGTTTCAAGATGTAAGCAAAAGAAGGAAAAACCCTAATTAAAATGTCTAAGGCTGGCAAAGAAAAGAAGAACCGGTCTCTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGATAATCAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAATAAAGTAAAGTGTCCCACAAGTAAAGCAAATAGATAAGATAAGAAAGTAAAAGGTTATTTGTAATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCGGCTGTTTTACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCAGATTTGCATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNTTACACGCATTTGG]




>consensus_3620#0
AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATAT
AAGTACTGCAATTGAAAAAAAAACTAAACAAGAACACTTCATAGTTTCAAGATGTAAGCA
AAAGAAGGAAAAACCCTAATTAAAATGTCTAAGGCTGGCAAAGAAAAGAAGAACCGGTCT
CTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGATAAT
CAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAATAA
AGTAAAGTGTCCCACAAGTAAAGCAAATAGATAAGATAAGAAAGTAAAAGGTTATTTGTA
ATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCGGCTGTTT
TACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATT
TAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCAGATTTGC
ATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNTTACACGCATTTGG

consensusID : consensus_3620#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACCACAGGGGCCAACCGGGGCGGTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATGTCTCCAAAAAATTAAAACTAAAAAAAAATCGGCATTACACGCATTGGGCAACGTTTGAAGCACGGCAAACTAAACGATGGAGGATCTGCTTTATGTACAGTTTAAGAAAAAACACACTCACACACAA-ATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTAGAAATCGAGGCATTCGAGGCCCAGGCCTAGCTTCATACCACGTCTCATCCATCCAGAACCGATGTNGTTTAAAGATAGTCAGTTTTGCAGCTATAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGGCGCAAGTAT]

[+] EMBL AL931105             [CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACCACAGGGGCCAACCGGGGCGGTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATGTCTCCAAAAAATTAAAACTAAAAAAAAATCGGCATTACACGCATTGGGCAACGTTTGAAGCACGGCAAACTAAACGATGGAGGATCTGCTTTATGTACAGTTTAAGAAAAAACACACTCACACACAA ATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTAGAAATCGAGGCATTCGAGGCCCAGGCCTAGCTTCATACCACGTCTCATCCATCCAGAACCGATGTNGTTTAAAGATAGTCAGTTTTGCAGCTATAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGGCGCAAGTAT]
[+] EMBL AGA284921            [                                                                                                                                                                                                                                                                                  ACACTCACACACAACATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTA                                                                                                                                            ]




>consensus_3620#1
CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCT
GTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACCACAGGGGCCAACCGGGGCG
GTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATGTCTCCAAAAAATTAAAACT
AAAAAAAAATCGGCATTACACGCATTGGGCAACGTTTGAAGCACGGCAAACTAAACGATG
GAGGATCTGCTTTATGTACAGTTTAAGAAAAAACACACTCACACACAAATAGAAAGCAAT
AGATTCCTTTTTAATCGTGACGAAACAATTGGCTGATAATGTAAAGCGCTCTTGTGAAAA
CTTGTAAGACACATAAACACATGTATTTATTTTGTCCCAGCACTGCTTAGAAATCGAGGC
ATTCGAGGCCCAGGCCTAGCTTCATACCACGTCTCATCCATCCAGAACCGATGTNGTTTA
AAGATAGTCAGTTTTGCAGCTATAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGG
CGCAAGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3620#0      AGAGAAGAATAACATAACATACGCATACGGTCGAAACCAAACGAACAAACTAAGCAATAT 60
consensus_3620#1      ---------------CAGATCCCCCGAGGTTTACTCGCGTAGGAGGAAA---AGTCATGT 42
                                      * ** * *  * * *      *  * **  ***   **  ** *

consensus_3620#0      AAGTACTGCAATTGAAAAAAAAACTAAACAAG-AACACTTCATAGTTTCAAGATGTAAGC 119
consensus_3620#1      AT-CGTCGTGAACGGATCTGTTGTTATTTAATTAGCTGCGAGGAATTGTTATGTGTAACC 101
                      *      *  *  * *        **   **  * *       * **   *  ***** *

consensus_3620#0      AAAAGAAGGAAAAACCCTAATTAAAATGTCTAAGG--CTGGCAAAGAAAAGAAGAACCGG 177
consensus_3620#1      ACAGGGGCCAACCGGGGCGGTCCAAAGGCCCAAGGACCTTTTGGCCATGGGTGGAAAATG 161
                      * * *    **         *  *** * * ****  **       *   *  ***   *

consensus_3620#0      TCTCTTGTTGAGCGTAACATTTTAAAAACAGTCAAGGGTACCAACCACCTAATATGAGAT 237
consensus_3620#1      TCTCCAA---AAAATTAAAACTAAAAAAAAATC---GGCATTA--CACGCATTGGGCAAC 213
                      ****      *   * * *  * ***** * **   ** *  *  ***  * *  *  * 

consensus_3620#0      AATCAAAATGATAAAACAAACAAGATAAAAAACAGAAACACGCAAAAATAGCTTACAAAA 297
consensus_3620#1      GTTTGAA---GCACGGCAAACTAAACGATGGAGGATCTGCTTTATGTACAGTTTA--AGA 268
                        *  **     *   ***** * *  *   *           *   * ** ***  * *

consensus_3620#0      TAAAGTAAAGTGTCCCACAAGTAAAGCA-AATAGATAAGATAAGAAA-GTAAAAGGTTAT 355
consensus_3620#1      AAAAACACACTCACACACAAATAGAAAGCAATAGATTCCTTTTTAATCGTGACGAAACAA 328
                       ***  * * *  * ***** ** *    *******    *   **  ** *      * 

consensus_3620#0      TTG--TAATAAAAAAAAGAAATGCAAGAAGGAAGTGGAAGCAGTTCAGCAGGAACTGTCG 413
consensus_3620#1      TTGGCTGATAATGTAAAGCGCTCTTGTGAAAACTTGTAAG--ACACATAAACACATGT-A 385
                      ***  * ****   ****   *      *  *  ** ***     **  *  *  ***  

consensus_3620#0      GCTGTTTTACAACAACTCGCGTTAGGAGGAAAAGTCATGTATCGTCGTGAACGGATCTGT 473
consensus_3620#1      TTTATTTTGTCCCAGCAC-TGCTTAGAAATCGAGGCATTCGAGGCCCAGGCCTAGCTTCA 444
                        * ****    ** * *  * *  **     ** ***     * *  *  *     *  

consensus_3620#0      TGTTATTTAATTAGCTGCGAGGAATTTGTTAATGTGTAACCACGGCCACGGGGTCAAGCA 533
consensus_3620#1      TACCACGTC-TCATCCATCCAGAACC-GATGTNGTTTAAAGATAGTCAGTTTTGCAGCTA 502
                      *   *  *  * * *      ***   * *   ** ***  *  * **      **   *

consensus_3620#0      GATTTGCATGTGAAATGTCTCAAATTAAAACTAAAAATCGCNT-TACACGCATTTGG 589
consensus_3620#1      TAAATGCACCCGGTTTGTTATGAGTGAGAGGGGACGGGCGCAAGTAT---------- 549
                       *  ****   *   ***    * * * *    *    ***   **