cluster # 3641

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Anopheles gambiae
cluster # 3641 cluster # 3641 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3641#0 length = 684 sequences # 1

consensus_3641#1 length = 404 sequences # 1
consensus_3641#2 length = 101 sequences # 1

consensusID : consensus_3641#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATGCCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCACCGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCCAGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTGGTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGCGATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGACACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATCGCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCGCGCGATGGCGAGTTCA]

[+] EMBL BM650424             [CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATGCCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCACCGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCCAGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTGGTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGCGATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGACACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATCGCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCGCGCGATGGCGAGTTCA]




>consensus_3641#0
CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATG
CCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCAC
CGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAG
GTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATG
GGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACA
ATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCC
AGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTG
GTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGC
GATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGA
CACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATC
GCAGCAAGGATGATAGCGGTGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGACCATTT
CGATATCGCGCGATGGCGAGTTCA

consensusID : consensus_3641#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG]

[+] EMBL AGA285598            [AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG]




>consensus_3641#1
AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAA
ACAACAATGTAGCCCCGTCAGCCAATGGGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCG
ATCATTTCGATCGTCGCAATCCCAACAATCGTAGCGGACATCGGCCACAGGGAGGACACA
GGGAAGCGGCCGGCGCAACACCCGGTCAGGGTGGAAAAGGAGTAGGAGGAGCCAGCGGGG
CAAATGGCGGCGGTGCTGCGGTGGCACGAAACCACGACAAATTGCTGGCAACCTGATGGA
CAGCAAGAACGATGAGGATGCGCTCGACTTTGAGGCGGAGGATGGCGAATGCAACGATGC
ACCGAAGGAGCCGGAGAAGAAAGCAGATGATGCCACAGAGAAGG

consensusID : consensus_3641#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 101
fasta sequence

                              [AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA]

[+] EMBL AL695887             [AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGACCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA]




>consensus_3641#2
AGGCAGATTGCCCCAGGCTTTAGAGGGGTGCATGCTCGGCCAAGCTGGAACCGAATCTGA
CCATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3641#0      CCGACGAGCTTGACGAAAGCACGCTGGCACAGCTAGAAGAGAGAAAGAAAGAAAAGAATG 60
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      CCTTCATACAGAAGATAGCGAAAGAGTATAAGGGATTTGCGGAGGGTGAAGGGCCACCAC 120
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      CGGATCCGGCGTACAGCTTTCTGGCCGACGTAGAGCGCGACGGTGAGAAAGCGGCGTCAG 180
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      GTGCGGCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATG 240
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      GGAATGGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGCCGCAATCCCAACA 300
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      ATCGTAGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGAGCAACACCCGGCC 360
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ------------------------------------------------------------
                                                                                  

consensus_3641#0      AGGGTGGAAGAGGTAGGGGAGGGAAGCAACATGGCCATCATGGTCATCACGGCGGTGGTG 420
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      ----------------------------AGCGCGACGGTGAGAAAGCGGCGTCAGGTGCG 32
                                                                                  

consensus_3641#0      GTGGTGGCGGTGGGACGAACATTCAGCGTTCGTTTTCCACCAACGAGCACGACGGTTGGC 480
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      GCGGCTGGTGATGGAGGAGCCGCCCCAAACAACAATGTAGCCCCGTCAGCCAATGGGAAT 92
                                                                                  

consensus_3641#0      GATCAGCTACGGGGGAGCAACAGAGGCGTGGAACGAGTGGCCGTGGAACGACACACGTGA 540
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      GGTCGTAGTCCGCCGGTGAAAGGGGCCGATCATTTCGATCGTCGCAATCCCAACAATCGT 152
                                                                                  

consensus_3641#0      CACACGAAGGAGGTGGACACTGGAGGTCACGCGGTGAGCACCATGATGGCCAGGAGCATC 600
consensus_3641#2      ---------------------------------------------------AGGCAGATT 9
consensus_3641#1      AGCGGACATCGGCCACAGGGAGGACACAGGGAAGCGGCCGGCGCAACACCCGGTCAGGGT 212
                                                                          *       

consensus_3641#0      GCAGCAAGGATGATAGCGG-----TGTGCATGCCTCGGCCAAGCTGGAACCGAATCTGAC 655
consensus_3641#2      GCCCCAGGCTT--TAGAGG-----GGTGCATGC-TCGGCCAAGCTGGAACCGAATCTGAC 61
consensus_3641#1      GGAAAAGGAGTAGGAGGAGCCAGCGGGGCAAATGGCGGCGGTGCTGCGGTGGCACGAAAC 272
                      *    * *  *   **  *      * ***     ****   ****     * *    **

consensus_3641#0      CATTTCGATATC-GCGCGATGGCGAGTTCA------------------------------ 684
consensus_3641#2      CATTTCGATATCCGCGCGATGGCGAGTTCAACGAGTGTGA-------------------- 101
consensus_3641#1      CACGACAAATTGCTGGCAACCTGATGGACAGCAAGAACGATGAGGATGCGCTCGACTTTG 332
                      **   * *  *    ** *      *  **                              

consensus_3641#0      ------------------------------------------------------------
consensus_3641#2      ------------------------------------------------------------
consensus_3641#1      AGGCGGAGGATGGCGAATGCAACGATGCACCGAAGGAGCCGGAGAAGAAAGCAGATGATG 392
                                                                                  

consensus_3641#0      ------------
consensus_3641#2      ------------
consensus_3641#1      CCACAGAGAAGG 404