cluster # 3642

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Anopheles gambiae
cluster # 3642 cluster # 3642 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3642#0 length = 819 sequences # 2

consensus_3642#1 length = 378 sequences # 1

consensusID : consensus_3642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 819
fasta sequence

                              [TCCCCCNAGGTTAAACATTGGTGTCTTATTCTTGATTTAGATTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGAAGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAATCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAAAAAGTATAATCAAAATAATGCTCCCATTGTTACCATCGATAGCGTGTGCCGTTAATGTGGACTGTAATCGTATGCACGTTTTCTTGTCGCGGTTTATGCAAAATGCTAAGGACATTGCGCTAACTCGATCGTGTTGTTCAACGCTGGTTGTGGTGAATGTGGTCGTATGCTTGTTACTCCGTCGATTCGTTTGAGAGACATTGCGATACATAGTATCATATAGCTACCATACACAACGCTGAGACCAAGAGGAGAGGCATTAACATTTGCGTAATATAACAGTTCATCTGTGAAACACAATCATTCTGTTGTTTCTGATTTCCATTGAATCGCTCGTTTTGCTAAAAAAAGCTCACCATCGGCAC-AATAACATGATGCTTTTGCCAACTCAGTAAAAGTAAACATAAAAAAAACCACA-ATAACACAAACATGAANCACTACCTTGTATTTGTCATCACTACAGCAGAGGCGGAAAAGTTGATCAATAATCGTGCGGAAGCGTGCCAGATGCAGATTTTAGGCGAAATCATTCCACGAATTAAAACAAAACCCAAGCTAAACATAGACATCAAACAAACCAGCGTTAGAAATCAAAAGA]

[+] EMBL AL933145             [TCCCCCNAGGTTAAACATTGGTGTCTTATTCTTGATTTAGATTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGAAGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAATCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAAAAAGTATAATCAAAATAATGCTCCCATTGTTACCATCGATAGCGTGTGCCGTTAATGTGGACTGTAATCGTATGCACGTTTTCTTGTCGCGGTTTATGCAAAATGCTAAGGACATTGCGCTAACTCGATCGTGTTGTTCAACGCTGGTTGTGGTGAATGTGGTCGTATGCTTGTTACTCCGTCGATTCGTTTGAGAGACATTGCGATACATAGTATCATATAGCTACCATACACAACGCTGAGACCAAGAGGAGAGGCATTAACATTTGCGTAATATAACAGTTCATCTGTGAAACACAATCATTCTGTTGTTTCTGATTTCCATTGAATCGCTCGTTTTGCTAAAAAAAGCTCACCATCGGCAC AATAACATGATGCTTTTGCCAACTCAGTAAAAGTAAACATAAAAAAAACCACA ATAACACAAACATGAANC                                                                                                                                                                  ]
[+] EMBL BX608384             [                                                                                                                                                                                                            CATAGCGAAATCAATAAAAAGTATAATC AAATAATGCTCCCATTGTTACCATCGACAGCGTGTGCCGTTAATGTGGACTGTAATCGTATGCACGTTTTCTTGTCGCGGTTTATGCAAAATGCTAAGGACATTGCGCTAACTCGATCGTGTTGTTCAACGCTGGTTGTGGTGAATGTGGTCGTATGCGTGTTACTCCGTCGATTCGTTTGAGAGACATTGCGATACATAGTATCATATAGCTACTATACACAACGCTGAGACCAAGAGGAGGAGCATTAACATTTGCGTAATATAACAGTTCATCTGTGAAACA AATCATTCTGTTGTTTCTGATTTTCATTGAATCGCTCGTTTTGCTAAAAAAAGCTCACCATCGGCACAAATAACATGTTGCTTTTGCCAATTCAGTAAAAGTAAA ATAAAAAAAACCACAGATAA ACAAA ATGAAACACTACCTTGTATTTGTCATCACTACAGCAGAGGCGGAAAAGTTGATCAATAATCGTGCGGAAGCGTGCCAGATGCAGATTTTAGGCGAAATCATTCCACGAATTAAAACAAAACCCAAGCTAAACATAGACATCAAACAAACCAGCGTTAGAAATCAAAAGA]




>consensus_3642#0
TCCCCCNAGGTTAAACATTGGTGTCTTATTCTTGATTTAGATTATTGGTAAATACTCGTC
TAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGAAGCAATAGTGCGTTGTGCT
GGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAATCTGCACGTGCACTGCGTT
CGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAAAAAGTATAATCAAAATAAT
GCTCCCATTGTTACCATCGATAGCGTGTGCCGTTAATGTGGACTGTAATCGTATGCACGT
TTTCTTGTCGCGGTTTATGCAAAATGCTAAGGACATTGCGCTAACTCGATCGTGTTGTTC
AACGCTGGTTGTGGTGAATGTGGTCGTATGCTTGTTACTCCGTCGATTCGTTTGAGAGAC
ATTGCGATACATAGTATCATATAGCTACCATACACAACGCTGAGACCAAGAGGAGAGGCA
TTAACATTTGCGTAATATAACAGTTCATCTGTGAAACACAATCATTCTGTTGTTTCTGAT
TTCCATTGAATCGCTCGTTTTGCTAAAAAAAGCTCACCATCGGCACAATAACATGATGCT
TTTGCCAACTCAGTAAAAGTAAACATAAAAAAAACCACAATAACACAAACATGAANCACT
ACCTTGTATTTGTCATCACTACAGCAGAGGCGGAAAAGTTGATCAATAATCGTGCGGAAG
CGTGCCAGATGCAGATTTTAGGCGAAATCATTCCACGAATTAAAACAAAACCCAAGCTAA
ACATAGACATCAAACAAACCAGCGTTAGAAATCAAAAGA

consensusID : consensus_3642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [AAACCCCAAAAACAGGTGTTAAGCCTTTTACTCCGTGGGTGTTAGGGCGGAGAGATTGCAGCGGCAAGTTAGCTTTCTGTCTTCTCCGCTCCACCGACGGGGATTAGTATGGCTTTTGTAATCTTTTGTGCTGTGGTGTTGTAAAGTGCAAACATTGGTGTCCTTTATTCTTGATTTAGATTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGAAGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAATCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAAAAAGTATAATCAAAAAAA]

[-] EMBL AGA285648            [AAACCCCAAAAACAGGTGTTAAGCCTTTTACTCCGTGGGTGTTAGGGCGGAGAGATTGCAGCGGCAAGTTAGCTTTCTGTCTTCTCCGCTCCACCGACGGGGATTAGTATGGCTTTTGTAATCTTTTGTGCTGTGGTGTTGTAAAGTGCAAACATTGGTGTCCTTTATTCTTGATTTAGATTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGAAGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAATCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAAAAAGTATAATCAAAAAAA]




>consensus_3642#1
AAACCCCAAAAACAGGTGTTAAGCCTTTTACTCCGTGGGTGTTAGGGCGGAGAGATTGCA
GCGGCAAGTTAGCTTTCTGTCTTCTCCGCTCCACCGACGGGGATTAGTATGGCTTTTGTA
ATCTTTTGTGCTGTGGTGTTGTAAAGTGCAAACATTGGTGTCCTTTATTCTTGATTTAGA
TTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGA
AGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAA
TCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAA
AAAGTATAATCAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3642#0      ------------------------------------------------------------
consensus_3642#1      AAACCCCAAAAACAGGTGTTAAGCCTTTTACTCCGTGGGTGTTAGGGCGGAGAGATTGCA 60
                                                                                  

consensus_3642#0      ------------------------------------------------------------
consensus_3642#1      GCGGCAAGTTAGCTTTCTGTCTTCTCCGCTCCACCGACGGGGATTAGTATGGCTTTTGTA 120
                                                                                  

consensus_3642#0      ----------------TCCCCCNAGGT-TAAACATTGGTGTC--TTATTCTTGATTTAGA 41
consensus_3642#1      ATCTTTTGTGCTGTGGTGTTGTAAAGTGCAAACATTGGTGTCCTTTATTCTTGATTTAGA 180
                                      *      * **  *************  ****************

consensus_3642#0      TTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGA 101
consensus_3642#1      TTATTGGTAAATACTCGTCTAAAGGCTAAAGGTGAACCTAAAACGTGACAGCACGTGTGA 240
                      ************************************************************

consensus_3642#0      AGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAA 161
consensus_3642#1      AGCAATAGTGCGTTGTGCTGGGGGGAGGAGAAGGTGATACGCGAAGGGGTCGTGATTTAA 300
                      ************************************************************

consensus_3642#0      TCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAA 221
consensus_3642#1      TCTGCACGTGCACTGCGTTCGTTCCTATTAATTCGTATTCGAGCATAGCGAAATCAATAA 360
                      ************************************************************

consensus_3642#0      AAAGTATAATCAAAATAATGCTCCCATTGTTACCATCGATAGCGTGTGCCGTTAATGTGG 281
consensus_3642#1      AAAGTATAATCAAAAAAA------------------------------------------ 378
                      *************** **                                          

consensus_3642#0      ACTGTAATCGTATGCACGTTTTCTTGTCGCGGTTTATGCAAAATGCTAAGGACATTGCGC 341
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      TAACTCGATCGTGTTGTTCAACGCTGGTTGTGGTGAATGTGGTCGTATGCTTGTTACTCC 401
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      GTCGATTCGTTTGAGAGACATTGCGATACATAGTATCATATAGCTACCATACACAACGCT 461
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      GAGACCAAGAGGAGAGGCATTAACATTTGCGTAATATAACAGTTCATCTGTGAAACACAA 521
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      TCATTCTGTTGTTTCTGATTTCCATTGAATCGCTCGTTTTGCTAAAAAAAGCTCACCATC 581
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      GGCACAATAACATGATGCTTTTGCCAACTCAGTAAAAGTAAACATAAAAAAAACCACAAT 641
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      AACACAAACATGAANCACTACCTTGTATTTGTCATCACTACAGCAGAGGCGGAAAAGTTG 701
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      ATCAATAATCGTGCGGAAGCGTGCCAGATGCAGATTTTAGGCGAAATCATTCCACGAATT 761
consensus_3642#1      ------------------------------------------------------------
                                                                                  

consensus_3642#0      AAAACAAAACCCAAGCTAAACATAGACATCAAACAAACCAGCGTTAGAAATCAAAAGA 819
consensus_3642#1      ----------------------------------------------------------