cluster # 3658

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Anopheles gambiae
cluster # 3658 cluster # 3658 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3658#0 length = 685 sequences # 2

consensus_3658#1 length = 228 sequences # 1

consensusID : consensus_3658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence

                              [TACGCTATAAGCAGGTGGAATGGGTACAGAAAGGCACCTCGTAGGAGGTTGTAGGACGCACAAACATGTCGCAGGAAGTGTGTGTGTGTGTGGCCATTATGAAGAGGGAGGCAGTAGGAAAGCTGGCATCGGTCGGATGCGGACAGATGCGGACACAGGTCCCTTGTTTCAAAGCAGACATACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCGCCTGCGATTAATCATCTTGCTGTTGTTGTGTTCTTATCCTTGGTTGTGAAATCGTCGCTAGACAAAGACTTACGGTGTTCCGTGTGTCGATGCGACGGTGTGTATGTATGCGTATTATGTATAGTTGTATGTTCGCTTCACTCGCAAGCTCTTTTTTTTTCTTGTTAATCACATCGTCTACACGATCTTTAGCTATTATGCGTATTTGTACAATTCAGTTTAGTTGTTGTACGCCTTAATAAGGGTAGG-CGTAAGGAAAGACACTCACACATTTGCACTTAAACTTAGCTACAGAACAAACCGTCTAGATAGCAATGATTATTCCTCAAACTCCAAATGCTCGTGCTATCGTGGTTTGCTTTGCCTTTTCTTTAATCGTTTGCGTACCGATCCGGCTANGTGAACNACTAACCGTTTGGTGGNACTGNCCCATGAATGTATATNA]

[+] EMBL BX626946             [TACGCTATAAGCAGGTGGAATGGGTACAGAAAGGCACCTCGTAGGAGGTTGTAGGACGCACAAACATGTCGCAGGAAGTGTGTGTGTGTGTGGCCATTATGAAGAGGGAGGCAGTAGGAAAGCTGGCATCGGTCGGATGCGGACAGATGCGGACACAGGTCCCTTGTTTCAAAGCAGACATACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCGCCTGCGATTAATCATCTTGCTGTTGTTGTGTTCTTATCCTTGGTTGTGAAATCGTCGCTAGACAAAGACTTACGGTGTTCCGTGTGTCGATGCGACGGTGTGTATGTATGCGTATTATGTATAGTTGTATGTTCGCTTCACTCGCAAGCTCTTTTTTTTTCTTGTTAATCACATCGTCTACACGATCTTTAGCTATTATGCGTATTTGTACAATTCAGTTTAGTTGTTGTACGCCTTAATAAGGGTAGG CGTAAGGAAAGACACTCACACATTTGCACTTAAACTTAGCTACAGAACAAACCGTCTAGATAGCAATGATTATTCCTCAAACTCCAAATGCTCGTGCTATCGTGGTTTGCTTTGCCTTTTCTTTAATCGTTTGCGTACCGATCCGGCTANGTGAACNACTAACCGTTTGGTGGNACTGNCCCATGAATGTATATNA]
[+] EMBL BX619473             [                                                               ACATGTCGCAGGAAGTGTGTGTGTGTGTGGCCATTATGAAGAGGGAGGCAGTAGGAAAGCTGGCATCGGTCGGATGCGGACAGATGCGGACACAGGTCCCTTGTTTCAAAGCAGACATACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCGCCTGCGATTAATCATCTTGCTGTTGTTGTGTTCTTATCCTTGGTTGTGAAATCGTCGCTAGACAAAGACTTACGGTGTTGCGTGTGTCGATGCGACGGTGTGTATGTATGCGTATTATGTATAGTTGTATGTTCGCTTCACTCGCAAGCTCTTTTTTTTTCTTGTTAATCACATCGTCTACACGATCTTTAGCTATTATGCGTATTTGTACAATTCAGTTTAGTTGTTGTACGCCTTAATAAGGGTAGGNNGTAAGGAAAGACACTCc                                                                                                                                                                                  ]




>consensus_3658#0
TACGCTATAAGCAGGTGGAATGGGTACAGAAAGGCACCTCGTAGGAGGTTGTAGGACGCA
CAAACATGTCGCAGGAAGTGTGTGTGTGTGTGGCCATTATGAAGAGGGAGGCAGTAGGAA
AGCTGGCATCGGTCGGATGCGGACAGATGCGGACACAGGTCCCTTGTTTCAAAGCAGACA
TACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCG
CCTGCGATTAATCATCTTGCTGTTGTTGTGTTCTTATCCTTGGTTGTGAAATCGTCGCTA
GACAAAGACTTACGGTGTTCCGTGTGTCGATGCGACGGTGTGTATGTATGCGTATTATGT
ATAGTTGTATGTTCGCTTCACTCGCAAGCTCTTTTTTTTTCTTGTTAATCACATCGTCTA
CACGATCTTTAGCTATTATGCGTATTTGTACAATTCAGTTTAGTTGTTGTACGCCTTAAT
AAGGGTAGGCGTAAGGAAAGACACTCACACATTTGCACTTAAACTTAGCTACAGAACAAA
CCGTCTAGATAGCAATGATTATTCCTCAAACTCCAAATGCTCGTGCTATCGTGGTTTGCT
TTGCCTTTTCTTTAATCGTTTGCGTACCGATCCGGCTANGTGAACNACTAACCGTTTGGT
GGNACTGNCCCATGAATGTATATNA

consensusID : consensus_3658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [CCGGGGTACAGGAAGGCACCTCGTAGGAGGTTGTTTCGGACGCACAAACATGTCGCAGGAAGTGTGTGTGTGTGGCCATTGTGAAGAGGGAGGCAGTAGAAAAGCGGGCATCGATCGGATGCGGACAGGTGCGGACACAGGTCCCTTGTTTCAAAGCAAACACACACACACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCG]

[+] EMBL BM610587             [CCGGGGTACAGGAAGGCACCTCGTAGGAGGTTGTTTCGGACGCACAAACATGTCGCAGGAAGTGTGTGTGTGTGGCCATTGTGAAGAGGGAGGCAGTAGAAAAGCGGGCATCGATCGGATGCGGACAGGTGCGGACACAGGTCCCTTGTTTCAAAGCAAACACACACACACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCG]




>consensus_3658#1
CCGGGGTACAGGAAGGCACCTCGTAGGAGGTTGTTTCGGACGCACAAACATGTCGCAGGA
AGTGTGTGTGTGTGGCCATTGTGAAGAGGGAGGCAGTAGAAAAGCGGGCATCGATCGGAT
GCGGACAGGTGCGGACACAGGTCCCTTGTTTCAAAGCAAACACACACACACACATTTAGT
AGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTAATTCCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3658#0      TACGCTATAAGCAGGTGGAATGGGTACAGAAAGGCACCTCGTAGGAGGTTGTA--GGACG 58
consensus_3658#1      ------------------CCGGGGTACAGGAAGGCACCTCGTAGGAGGTTGTTTCGGACG 42
                                           ******** **********************   *****

consensus_3658#0      CACAAACATGTCGCAGGAAGTGTGTGTGTGTGTGGCCATTATGAAGAGGGAGGCAGTAGG 118
consensus_3658#1      CACAAACATGTCGCAGGAAGTGTGTGTGTGTG--GCCATTGTGAAGAGGGAGGCAGTAGA 100
                      ********************************  ****** ****************** 

consensus_3658#0      AAAGCTGGCATCGGTCGGATGCGGACAGATGCGGACACAGGTCCCTTGTTTCAAAGCAGA 178
consensus_3658#1      AAAGCGGGCATCGATCGGATGCGGACAGGTGCGGACACAGGTCCCTTGTTTCAAAGCAAA 160
                      ***** ******* ************** ***************************** *

consensus_3658#0      CATACACA------TTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTA 232
consensus_3658#1      CACACACACACACATTTAGTAGAGCGTGTGGTACTCTGGTATATATATATAAGACAAGTA 220
                      ** *****      **********************************************

consensus_3658#0      ATTCCCCGCCTGCGATTAATCATCTTGCTGTTGTTGTGTTCTTATCCTTGGTTGTGAAAT 292
consensus_3658#1      ATTCCCCG---------------------------------------------------- 228
                      ********                                                    

consensus_3658#0      CGTCGCTAGACAAAGACTTACGGTGTTCCGTGTGTCGATGCGACGGTGTGTATGTATGCG 352
consensus_3658#1      ------------------------------------------------------------
                                                                                  

consensus_3658#0      TATTATGTATAGTTGTATGTTCGCTTCACTCGCAAGCTCTTTTTTTTTCTTGTTAATCAC 412
consensus_3658#1      ------------------------------------------------------------
                                                                                  

consensus_3658#0      ATCGTCTACACGATCTTTAGCTATTATGCGTATTTGTACAATTCAGTTTAGTTGTTGTAC 472
consensus_3658#1      ------------------------------------------------------------
                                                                                  

consensus_3658#0      GCCTTAATAAGGGTAGGCGTAAGGAAAGACACTCACACATTTGCACTTAAACTTAGCTAC 532
consensus_3658#1      ------------------------------------------------------------
                                                                                  

consensus_3658#0      AGAACAAACCGTCTAGATAGCAATGATTATTCCTCAAACTCCAAATGCTCGTGCTATCGT 592
consensus_3658#1      ------------------------------------------------------------
                                                                                  

consensus_3658#0      GGTTTGCTTTGCCTTTTCTTTAATCGTTTGCGTACCGATCCGGCTANGTGAACNACTAAC 652
consensus_3658#1      ------------------------------------------------------------
                                                                                  

consensus_3658#0      CGTTTGGTGGNACTGNCCCATGAATGTATATNA 685
consensus_3658#1      ---------------------------------