cluster # 3670

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Anopheles gambiae
cluster # 3670 cluster # 3670 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3670#0 length = 781 sequences # 2

consensus_3670#1 length = 328 sequences # 1

consensusID : consensus_3670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 781
fasta sequence

                              [GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGAGACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCATCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGCCGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACTTTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCTGTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATTGAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATCTACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGAA]

[+] EMBL CNS08TOV             [GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGAGACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCATCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGCCGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACTTTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCTGTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATTGAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATCTACTGTGTGCGCTACTAACCC                                        ]
[-] EMBL CNS08TOW             [                                                                                                                                                                                                                                                                                                                                                                                                                                          ATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTCCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACCACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCTGTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATTGAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATCTACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGAA]




>consensus_3670#0
GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGA
GACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCA
TCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGC
CGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACT
TTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGA
GCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGC
ATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCC
GCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAA
CAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAA
GTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCT
GTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATT
GAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATC
TACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGA
A

consensusID : consensus_3670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [TTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGAAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTATTTACTATTGCCCCGGACGCGTGGGCGG]

[-] EMBL BM610147             [TTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGAAAATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTATTTACTATTGCCCCGGACGCGTGGGCGG]




>consensus_3670#1
TTCCAGAGCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGAAA
ATTGGCATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCC
ACCGCCGCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAG
TTGAAACAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGA
CGCAAAGTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTA
TTTACTATTGCCCCGGACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3670#0      GGCGGTAAGCCGATCGAAACCGCCAGCACACTCCAGTCGGTGGCAAACGATTCGAAGCGA 60
consensus_3670#1      ------------------------------------------------------------
                                                                                  

consensus_3670#0      GACCTTGTGGCGCACGCCAGTTCTTCACCATCACCAACACCCCGATGCAACCGGCCAGCA 120
consensus_3670#1      ------------------------------------------------------------
                                                                                  

consensus_3670#0      TCCCGATGCCCTGCTACACCTCCAACCCGATCACGTCCCAAACGCTGCACCATCAGCAGC 180
consensus_3670#1      ------------------------------------------------------------
                                                                                  

consensus_3670#0      CGCCGGCGCACCAGACGCTTGCGGCCCAGCCGCAGCTGCAAACGCAGGTCCCGCCCCACT 240
consensus_3670#1      ------------------------------------------------------------
                                                                                  

consensus_3670#0      TTACCTTCATTCCGAGCACGTCGACGCTGGCGACCGATGCGGATCACAACTTCTTCCAGA 300
consensus_3670#1      -----------------------------------------------------TTCCAGA 7
                                                                           *******

consensus_3670#0      GCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGATAAATTGGC 360
consensus_3670#1      GCCTGGTGCCCGACATACAGACGATGACGATGGAGCAGAAGCGCAAGCTGA-AAATTGGC 66
                      *************************************************** ********

consensus_3670#0      ATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCC 420
consensus_3670#1      ATCCTGCAGCTGATCGACGGCATTCTCAATACGTAAATATCTCACATCGGTTCCACCGCC 126
                      ************************************************************

consensus_3670#0      GCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAA 480
consensus_3670#1      GCGGGGATTTGTACGTTTTTTATTGTATATTGTGTCTGTTTGCAGTTGATGCAGTTGAAA 186
                      ************************************************************

consensus_3670#0      CAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAA 540
consensus_3670#1      CAGGAATGTGTAGGGAATAGGAAGTTCAAACACAACTCTCGATTAGTTCGAAGACGCAAA 246
                      ************************************************************

consensus_3670#0      GTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCGCAATAGTAGCT 600
consensus_3670#1      GTGCAGGGAGCTGCTAGAAGGCATGAATTGGAGAGGTCAGCTCTAGGCACATTATTTACT 306
                      ************************************************ ** ** *  **

consensus_3670#0      GTTAGGGCAATAGTAAATAATGTGAATGAAATAGTATCTACACCTAGGTACAAGCTAATT 660
consensus_3670#1      ATTGCCCCGGACGCGTGGGCGG-------------------------------------- 328
                       **    *    *        *                                      

consensus_3670#0      GAAGATAGATCGAGAAAAAGAATTGTAAAAAAATATTTTAACGTAATAGATAGTAAGATC 720
consensus_3670#1      ------------------------------------------------------------
                                                                                  

consensus_3670#0      TACTGTGTGCGCTACTAACCCAATCTCCCGAATCCTGCATCCTCCTATCCCATTTCTCGA 780
consensus_3670#1      ------------------------------------------------------------
                                                                                  

consensus_3670#0      A 781
consensus_3670#1      -