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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 960 fasta sequence
[TAAATTTGTTCACAAGCTTTAGGCGTCTGTCTTCCATCCATCCAGGGAGGTTGCAGGATTTTCCAAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTAATGATGTTTAATTTCCTAACAATAATTTTTAATTTCCCCAGCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGAAAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTGACAGCTGTTGAAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCCGGTAATAGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAAC-GGCCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAAC-ACATCTCACAACACTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAATGTTTCAGTTCTTCCATATGATTTTCAAAACATCTCAAGCTGGATAGAGTTTGACAGCTCTTTGTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAATACACCATTTGGATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGAAAGTGATTTGGAAAACCCTGTAATAATTCAATCGTAAGACAGGTACTGAACTCATTCAAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTGATTTGTTGAGCTAGCAGGTATGCTTCCCAGTACTAAACGATACAATCGAAACTGGGAATCACTGTATACGATTATTTGACTAATAATTGTTTGCACGCTGGAAATGTGTTTCAAATTTATAAAGTCAAC]
[+] EMBL CNS08TK7 [TAAATTTGTTCACAAGCTTTAGGCGTCTGTCTTCCATCCATCCAGGGAGGTTGCAGGATTTTCCAAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTAATGATGTTTAATTTCCTAACAATAATTTTTAATTTCCCCAGCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGAAAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTGACAGCTGTTGAAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCCGGTAATAGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAAC GGCCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAAC ACATCTCACAACACTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAATGTTTCAGTTCTTCCATATGATTTTCAAAACATCTCAAGCTGGATAGAGTTTGACAGCTCTTTGTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAATACACCATTTGGATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGAAAGTGATTTGGAAAACCCTGTAATAATTCAATCGTAAGACAGGTACTGAACTCATTCAAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTGATTTGTTGAGCTAGCAGGTATGCTT ]
[-] EMBL CNS08TK8 [ AATTTCCTAAAAATAATTTTTAATTTCCCCAGCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGAAAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTAACAGCTGTTGAAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCCGGTAATAGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAACGGGCCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAACAACATCTCACAAAACTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAATGTTTCAGTTCTTCCATATGATTTTCAAAACATCTCAAGCTGGATAGAGTTTAACAGCTCTTTGTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAATACACCATTT GATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGAAAGTGATTTGGAAAACCCTGTAATAATTCAATCGTAAGACAGGTACTGAACTCATTCAAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTGATTTGTTGAGCTAGCAGGTAAGCTTCCCAGTACTAAACGATACAATCGAAACTGGGAATCACTGTATACGATTATTTGACTAATAATTGTTTGCACGCTGGAAATGTGTTTCAAATTTATAAAGTCAAC]
consensusID : consensus_3672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[CCGGCTAGTTGTGTTCACAGCGAGCGCATATGAATTCGAGGAAGATTACACGATCACAGCAGAAGTGCTTGCCCAGCTGGTACCAAACGCCCGGCGGGTCGAAATCGGTTCCAGCAAACCGTTACATGACAACGTCTTTACGCAACCGTATCAATTTTTCAAATCGAGAACCGCTTTCGGTTATCTTTTGCCTACCGATCACCATAGCAAGTGGGAGTTGCGCCAATACAACCATCGGTACATACTTCCCTTACGGTGAGGTAAAGAAGTGTCCAATATGTGGTGGGTGACAATTCAAAGTTCGTTACAATATAGATTGTACCTTTTTCCACAATGAACATTTGTCATGTTCATGTGCTGCCATGTCTAGAAAAGTAGTTATTCAAATTTGTTCAACAAGCTTTAGGCGTCTGTCTTCTATCCATCCAGGAAGGTTGCAAGTCAGAAGATACAGGATTTTCCTAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTATGATGGTTAATTTCCTAACAAATAATTTTTAATTTCCCAAG]
[+] EMBL BM609971 [CCGGCTAGTTGTGTTCACAGCGAGCGCATATGAATTCGAGGAAGATTACACGATCACAGCAGAAGTGCTTGCCCAGCTGGTACCAAACGCCCGGCGGGTCGAAATCGGTTCCAGCAAACCGTTACATGACAACGTCTTTACGCAACCGTATCAATTTTTCAAATCGAGAACCGCTTTCGGTTATCTTTTGCCTACCGATCACCATAGCAAGTGGGAGTTGCGCCAATACAACCATCGGTACATACTTCCCTTACGGTGAGGTAAAGAAGTGTCCAATATGTGGTGGGTGACAATTCAAAGTTCGTTACAATATAGATTGTACCTTTTTCCACAATGAACATTTGTCATGTTCATGTGCTGCCATGTCTAGAAAAGTAGTTATTCAAATTTGTTCAACAAGCTTTAGGCGTCTGTCTTCTATCCATCCAGGAAGGTTGCAAGTCAGAAGATACAGGATTTTCCTAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACCCTGATGTTTCATTTTTTTTATGATGGTTAATTTCCTAACAAATAATTTTTAATTTCCCAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3672#0 TAAATTTGTTCACAAGCTTTAGGCGTCTGTCTTCCATCCATCCAGGGAGGTTGCAGGATT 60
consensus_3672#1 ------------------------------------------------------------
consensus_3672#0 TTCCAAGTCACTTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTCCACATTCCAACC 120
consensus_3672#1 ------------------------------------------------------------
consensus_3672#0 CTGATGTTTCATTTTTTTTAATGATGTTTAATTTCCTAACAATAATTTTTAATTTCCCCA 180
consensus_3672#1 ------------------------------------------------------------
consensus_3672#0 GCATGATTTTCAACACGCCTCAAGCTGGACTGAGTTTGACAGTGCTTTGTGATGTGTTGA 240
consensus_3672#1 ------------------------------------------------------------
consensus_3672#0 AAATCATGTGTAAAAACTGAAATTTCATTATGAGGCAATTACACCACTTGACAGCTGTTG 300
consensus_3672#1 ------------------------------------------------------------
consensus_3672#0 AAAAACATCTTGGAGGCGGTGAATAATTATGTGCACAATCGAAAGTGATGTGGAAAACCC 360
consensus_3672#1 ------------------CCGGCTAGTTGTGTTCACAG-CGAGCGC-ATATGAATTCGAG 40
* ** ** *** **** *** * ** ** *
consensus_3672#0 GGTAAT-AGAGTATCTCGGGGAAAGTCTGTGTTTTTTTCTAAATTATTGTGATACAACGG 419
consensus_3672#1 GAAGATTACACGATCACAGCAGAAGTGCTTGCCCAGCTGGTACCAAACGCCCGGCGG-GT 99
* ** * * *** * * **** ** * * * * * *
consensus_3672#0 CCTGATCAATTCTTACAGTGTTTTCCCAGTCAATTTCCAATGTCAACACATCTCACAACA 479
consensus_3672#1 CGAAATCGGTTCCAGCAAACCGTTACATGACAACGTCTTTACGCAAC-CGTATCA----A 154
* *** *** ** ** * * *** ** **** * * *** *
consensus_3672#0 CTTGCGAGATGTTTTTCAGCAAACTGTCAAGTATTGCATTTGCATCACAATAAT--GTTT 537
consensus_3672#1 TTTTTCAAATCGAGAACCGCTTTCGGTTATCTTTTGCCTACCGATCACCATAGCAAGTGG 214
** * ** * ** * ** * * **** * ***** *** **
consensus_3672#0 CAGTTCTTCCA-TATGATTTTCAAAACAT-CTCAAGCTGGATAGAGTTTGACAGCTCTTT 595
consensus_3672#1 GAGTTGCGCCAATACAACCATCGGTACATACTTCCCTTACGGTGAGGTAAAGAAGTGTCC 274
**** *** ** * ** **** ** * *** * * * * *
consensus_3672#0 GTGATGTGTTGAATGTCATGTGGACGAACTGAAATTTTATTGTGAAGCAAAT-ACACCAT 654
consensus_3672#1 AATATGTGGTGGGTGACA---------ATTCAAAGTTCGTTACAATATAGATTGTACCTT 325
***** ** ** ** * * *** ** ** * * ** *** *
consensus_3672#0 TTGGATATCTGTTGAAAAACATCTTGGAGGAGGTGGTGAATTAATGATGTATACATTCGA 714
consensus_3672#1 TT-----TCCAC-AATGAACATTT-----GTCATGTTCATGTGCTGCCATGTCTAG--AA 372
** ** * ***** * * ** * * * ** * * * *
consensus_3672#0 AAGTGATT-TGGAAAACCCTGTAATAA--TTCAATCGTAAGACAGGTACTGAACTCATTC 771
consensus_3672#1 AAGTAGTTATTCAAATTTGTTCAACAAGCTTTAGGCGTCTG-----TCTTCTATCCATCC 427
**** ** * *** * ** ** ** * *** * * * * *** *
consensus_3672#0 AAAAAAATTGTAAAAATGCTTTTCGATATCATAAGTTAACCGCATACATTAAATTGCGTG 831
consensus_3672#1 AGGAAGGTTGCAAG--------------TCAGAAGATA-CAGGATTTTCCTAGTCAC--- 469
* ** *** ** *** *** ** * * ** * * *
consensus_3672#0 ATTTGTTGAGCTAGCAGGTATGCTTCCCAGTACTAAACGATACAATCGAAACTGGGAATC 891
consensus_3672#1 -TTTTTAAGGTAAACATTTGTTTTTCGCAAAGTTATTC--CACATTCCAACCCTGATGTT 526
*** * * * ** * * *** ** ** * *** ** ** * * *
consensus_3672#0 ACTGTATACGATTATTTGACTAATAATTGTTTGCACGCTGGAAATGTGTTTCAAATTTAT 951
consensus_3672#1 -----------TCATTTTTTTTATGATGGTTAATTTCCTAACAAATAATTTTTAATTTCC 575
* **** * ** ** *** ** ** *** *****
consensus_3672#0 AAAGTCAAC 960
consensus_3672#1 CAAG----- 579
***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||