cluster # 3679

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Anopheles gambiae
cluster # 3679 cluster # 3679 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3679#0 length = 677 sequences # 2

consensus_3679#1 length = 663 sequences # 1

consensusID : consensus_3679#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence

                              [CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGA-AAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAACCGTTGCAGCAGAAACGTCCACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGGATTAAGAAGCGCGTCACGCTGAGCTCGATACCGCCACAG]

[+] EMBL BM613188             [CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGA AAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAACCGTTGCAGCAGAAACGTCCACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGGATTAAGAAGCGCGTCACGCTGAGCTCGATACCGCCACAG]
[+] EMBL BM609600             [CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAGGAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCA                                                                                                                                                                                                                                                                            ]




>consensus_3679#0
CCGCCCACGCGTCCGGGACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCA
CAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAA
AGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGT
CGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCA
AGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGCGTAGTGAA
AATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACAT
GCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAA
TCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGT
GACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTC
GGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAACCGTTGCAGCAGAAACGTCC
ACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGGATTAAGAAGCGCGTCACGCTGA
GCTCGATACCGCCACAG

consensusID : consensus_3679#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCGGACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAAC]

[+] EMBL BM627759             [CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCGGACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGATGTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATTTTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGGAGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGTTAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTAGTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAGATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATCCTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTGCATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTATTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGCAAC]




>consensus_3679#1
CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCG
GACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGAT
GTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATT
TTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGG
AGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGT
TAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTA
GTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAG
ATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATC
CTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTG
CATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTA
TTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGC
AAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3679#0      ------------------------------------------------------------
consensus_3679#1      CCGGGCGCAGCAGCTTCGTCAGCGGCATCTTCTCCTCGGCCGTGCAGCGGCGCGGCAGCG 60
                                                                                  

consensus_3679#0      ---------------------CCGCCCACGCGTCCGG-GACGAAGATGAGGAACCGAGAT 38
consensus_3679#1      GACACGAGAGCGCCCCGCACACCACCGTCGCCCTTAACAACGAAGATGAGGAACCGAGAT 120
                                           ** **  ***        *********************

consensus_3679#0      GTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATT 98
consensus_3679#1      GTGTACAGCTAACGAATCAGCACAAAGGGGCCATCCGTTTCATCCGAAAGATGAAGTATT 180
                      ************************************************************

consensus_3679#0      TTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGG 158
consensus_3679#1      TTGTAGCGCGGCGCAAGTTTAAAGAGGCCTTAAAACCGTACGATGTGAAAGACGTCATGG 240
                      ************************************************************

consensus_3679#0      AGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGT 218
consensus_3679#1      AGCAGTACGCCGCCGGACATGTCGACCTGCTTGGCCGCGTGAAAAACGTTCAGACTAGGT 300
                      ************************************************************

consensus_3679#0      TAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTA 278
consensus_3679#1      TAGACCAAATTCTTGGCAAGCAAGGATCGAAATCAAAAGATGTGTATGCATCGAAAATTA 360
                      ************************************************************

consensus_3679#0      GTTTAGCTTCGCGCGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAG 338
consensus_3679#1      GTTTAGCTTCGCGTGTAGTGAAAATTGAAAGACAAGTTGACGACATAGAGACAAAGGTAG 420
                      ************* **********************************************

consensus_3679#0      ATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATC 398
consensus_3679#1      ATTCATTTATAGATTTATACATGCAGGATCGGATGCGTCTTTTATCACTTCCACTACATC 480
                      ************************************************************

consensus_3679#0      CTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTG 458
consensus_3679#1      CTGACACATCACATTCCAACAATCCAAACCTTCCATCATTGCCACCGAAAGGCGGTGGTG 540
                      ************************************************************

consensus_3679#0      CATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTA 518
consensus_3679#1      CATCGGCTGTAATCACATCTGTGACAACTAGTTCTAGTGGTTCGTTGAAACCAAAGCCTA 600
                      ************************************************************

consensus_3679#0      TTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGC 578
consensus_3679#1      TTTTAGTAGATAAACAATTTTCGGAACCGAATTCACCGATTGCGAAAACGTTCGAGGAGC 660
                      ************************************************************

consensus_3679#0      AACCGTTGCAGCAGAAACGTCCACCAATGCAGCGCGGCTTCTCCGATCTGGGGGCACAGG 638
consensus_3679#1      AAC--------------------------------------------------------- 663
                      ***                                                         

consensus_3679#0      ATTAAGAAGCGCGTCACGCTGAGCTCGATACCGCCACAG 677
consensus_3679#1      ---------------------------------------