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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1236 fasta sequence
[CAAGAATCCCCCGNGGTTATGCTCGAATCACGTGTTTGGCGAACTTTAATGCGATACAGTTAATAGCAATCAATCTCTTAACCAGTTCTAGAATGTTTAGGATACTAGTTACACGATAAGCAAGCTATCTAGATATAGTACTACACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATATCTGTAACAAAACACAATATATACGTTGCATATATATTATAACAACCACCAGGATTCTTTGCAACACAAAAAGGGACACATTTTTGCCTCATTTAAATAGCCCCCACACATGGTTTATTAGCCCAGATCGGTATTAATAACCATTATTATTTATCTTTGGTTAATTGATTCCANTTTNTGGAACAACACTTTACAACAATTTGGACACGAACCAACTAACACAGCTGNGCCACAACAATTTANCTTAGGACAATTTGNGNCGGCGAGNGNTGCACGGCCGGACGTTACACAANACTTTAAACAACCGGTTGGTTAAAGTTAANGCCTTCGGAAAAGGACAAACATTACCCATTTGTTAAGAACACAGAGGCAGGTGGGTCTATATCCANAAATAACNGGTTCCACGGGAGCGGAACAGGGGTGGAACCCGNGGACGCTTACGCGTTAACTTGGAACCTTTGGAAACACATTTAACACGGAAAAGGAAATAAGCAAGAAACACCCCACAAGGAACCACACACAACAACCACGCGCAAGGACATTACACCNACAGGGACAGGCTTTTGGCACACACCAGGTGGGGGAATTTAACCGCGGACCAAGAGGGACTTCCCCGGCTTGGACCGGNAATTGGGAATTCCTTTATACTNACTTTTGGAACTTTAAGACACCACANCAAGGTTATAAAGCTNACACATAGNCGACTTTGGNGTTCCTTAACACCACCCTTCTATTCCCCGGTNGAAGCTACACCACACCTTTGGGTAACCAGACGCNTTNAATTCTCAANAACGCCCTGGGCAAACAGGCTTNAACATCNTTGGGCCAAAAAAAGCACAAGTCAAANCCAAANCTGGGCTGGCNTCCCCATACAACAATNCTCTCGCAGNAGTCAACAGGNGGTGGTTACGGCACCNACTTTGGTCATTACACTAACCAACNCCCAAGANACAGGAAAACACCAGCANTAATTAATCCGGGCATTATTAAACTCCATCGGTCTAANCACTTTGGCATGCCCCAACAGAACCCCCAAACAACAATCTC]
[+] EMBL AL692460 [CAAGAATCCCCCGNGGTTATGCTCGAATCACGTGTTTGGCGAACTTTAATGCGATACAGTTAATAGCAATCAATCTCTTAACCAGTTCTAGAATGTTTAGGATACTAGTTACACGATAAGCAAGCTATCTAGATATAGTACTACACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATATCTGTAACAAAACACAATATATACGTTGCATATATATTATAACAACCACCAGGATTCTTTGCAACACAAAAAGGGACACATTTTTGCCTCATTTAAATAGCCCCCACACATGGTTTATTAGCCCAGATCGGTATTAATAACCATTATTATTTATCTTTGGTTAATTGATTCCANTTTNTGGAACAACACTTTACAACAATTTGGACACGAACCAACTAACACAGCTGNGCCACAACAATTTANCTTAGGACAATTTGNGNCGGCGAGNGNTGCACGGCCGGACGTTACACAANACTTTAAACAACCGGTTGGTTAAAGTTAANGCCTTCGGAAAAGGACAAACATTACCCATTTGTTAAGAACACAGAGGCAGGTGGGTCTATATCCANAAATAACNGGTTCCACGGGAGCGGAACAGGGGTGGAACCCGNGGACGCTTACGCGTTAACTTGGAACCTTTGGAAACACATTTAACACGGAAAAGGAAATAAGCAAGAAACACCCCACAAGGAACCACACACAACAACCACGCGCAAGGACATTACACCNACAGGGACAGGCTTTTGGCACACACCAGGTGGGGGAATTTAACCGCGGACCAAGAGGGACTTCCCCGGCTTGGACCGGNAATTGGGAATTCCTTTATACTNACTTTTGGAACTTTAAGACACCACANCAAGGTTATAAAGCTNACACATAGNCGACTTTGGNGTTCCTTAACACCACCCTTCTATTCCCCGGTNGAAGCTACACCACACCTTTGGGTAACCAGACGCNTTNAATTCTCAANAACGCCCTGGGCAAACAGGCTTNAACATCNTTGGGCCAAAAAAAGCACAAGTCAAANCCAAANCTGGGCTGGCNTCCCCATACAACAATNCTCTCGCAGNAGTCAACAGGNGGTGGTTACGGCACCNACTTTGGTCATTACACTAACCAACNCCCAAGANACAGGAAAACACCAGCANTAATTAATCCGGGCATTATTAAACTCCATCGGTCTAANCACTTTGGCATGCCCCAACAGAACCCCCAAACAACAATCTC]
consensusID : consensus_3684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 822 fasta sequence
[GAATCGCCCCAGGTTTAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGCAACAAAACGGAAATTTTGCTATTAATAGCCCCACAATGTTATGCCAGTCGTATATACATCTATTCTTGTATGATCATTTGANACATCAAATGAAACCANCAAGGCAACATACATGANTGCGCGGGGGCAGCNGAGTACANACTAACACGTGTAGTACCTGAANGAANTCATTNACGAAGANGTCTCCCAATCGTCCGNCGGGACAGGGACCGAGAGGTACTGACCTGACAACTAACGACCGAAANNAANCNAGACCAAAAAACACCAGAAGAATAACCANGAGTNTGANAACACGGGCGACATNACGCGCAACAGGAATCGGTGCGAATTGATCCTCTCATCANNTGACTACGACCAACANAGTAAACTAACTACNCATGGCTCCTACACAACCTTACTCCCGCNACNCTCAACATTGTNACAACACCATTNCAAAGACATTGCGAACAAGCTACATNG]
[+] EMBL AL697486 [GAATCGCCCCAGGTTTAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGCAACAAAACGGAAATTTTGCTATTAATAGCCCCACAATGTTATGCCAGTCGTATATACATCTATTCTTGTATGATCATTTGANACATCAAATGAAACCANCAAGGCAACATACATGANTGCGCGGGGGCAGCNGAGTACANACTAACACGTGTAGTACCTGAANGAANTCATTNACGAAGANGTCTCCCAATCGTCCGNCGGGACAGGGACCGAGAGGTACTGACCTGACAACTAACGACCGAAANNAANCNAGACCAAAAAACACCAGAAGAATAACCANGAGTNTGANAACACGGGCGACATNACGCGCAACAGGAATCGGTGCGAATTGATCCTCTCATCANNTGACTACGACCAACANAGTAAACTAACTACNCATGGCTCCTACACAACCTTACTCCCGCNACNCTCAACATTGTNACAACACCATTNCAAAGACATTGCGAACAAGCTACATNG]
consensusID : consensus_3684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[ATCATAAAACATCCATAACAAATTCCAAAGCATAATTGTTACCGACAAATACGTATAACACACATTAAAGGCTTCATTTTGTGGTTGTTCGGGCAATAGGCCTAGGAAAATGCAATCATATGTAAGATCATTAAGTCATTTTATTTACTAACCTTTTCGGTTCGCTTCGTTGTATAAGTTAGTTATTATTTATCTACTTCTAGTCAATGATGAGGGTTTACGTACGATGCGCGTTCTGTTATAAACAATACGATATGTGATTTAAAAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGAAAAAAAGGAAATTTTGCTATTAATAGCCCCAC]
[+] EMBL BX618932 [ATCATAAAACATCCATAACAAATTCCAAAGCATAATTGTTACCGACAAATACGTATAACACACATTAAAGGCTTCATTTTGTGGTTGTTCGGGCAATAGGCCTAGGAAAATGCAATCATATGTAAGATCATTAAGTCATTTTATTTACTAACCTTTTCGGTTCGCTTCGTTGTATAAGTTAGTTATTATTTATCTACTTCTAGTCAATGATGAGGGTTTACGTACGATGCGCGTTCTGTTATAAACAATACGATATGTGATTTAAAAAATTGCCCTATATATAGTTTTAACGTTAGGTTGAGATCGCTTATAATACTTTCTATGTAAAATGAATATTCCGCTTATGTGTATTACAAAAAAACAGAAAATACTGCGCTATATTTTGCTTATATGTATGCTCGAATCACGTGTTTGGCGAACCTTTAGTGCGATACAGTTAATGCAATCAATCTCTTAACCAGTTCTGAATGTTTAGGATACTGTTACACGATAAGCAAGCTTCTGATATGTACTCACAAAGCATGAATTATACACACACACACTCCCAGCCTATATTATTCTGTAACAAAACACAATATATACGTGCATATATATATACACACAGATCTTGAAAAAAAGGAAATTTTGCTATTAATAGCCCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3684#1 ------------------------------------------------------------
consensus_3684#2 ---------------------ATCATAAAACATCCATAACAAATTCCAAAGC---ATAAT 36
consensus_3684#0 CAAGAATCCCCCGNGGTTATGCTCGAATCACGTGTTTGGCGAACTTTAATGCGATACAGT 60
consensus_3684#1 ------------------------------------------------------------
consensus_3684#2 TGTTACCGACAAATACGTATAACACACATTAAAGGCTTCATTTTGTGGTTGTTCGGGCAA 96
consensus_3684#0 TAATAGCAATCAATCTCTTAACCAGTTCTAGAATGTTTAGGATACTAGTTACACGATAAG 120
consensus_3684#1 ------------------------------------------------------------
consensus_3684#2 TAGGCCTAGGAAAATGCAATCATATGTAAGATCATTAAGTCATTTTATTTACTAACCTTT 156
consensus_3684#0 CAAGC-TATCTAGATATAGTACTACACAA-AGCATGAA----TTATACACACACACACTC 174
consensus_3684#1 ------------------------------------------------------------
consensus_3684#2 TCGGTTCGCTTCGTTGTATAAGTTAGTTATTATTTATCTACTTCTAGTCAATGATGAGGG 216
consensus_3684#0 CCAGCCTATATTATATCTGTAACAAAACACAATATATACGTTGCATATATATTATAACAA 234
consensus_3684#1 ---------------------------------GAATCGCCCCAGGTTTAAA---TTGCC 24
consensus_3684#2 TTTAC-GTACGATGCGCGTT-CTGTTATAAACAATACGATATGTGATTTAAAAAATTGCC 274
consensus_3684#0 CCACCAGGATTCTTTGCAACACAAAAAGGGACACATTTTTGCCTCATTTAAATA--GCCC 292
****** **
consensus_3684#1 CTATATATAGTTT-TAACGTTAGGTTGAGATCGCTTATAAT-ACTTTCTATGTAAAATGA 82
consensus_3684#2 CTATATATAGTTT-TAACGTTAGGTTGAGATCGCTTATAAT-ACTTTCTATGTAAAATGA 332
consensus_3684#0 CCACACATGGTTTATTAGCCCAGATCGGTATTAATAACCATTATTATTTATCTTTGGTTA 352
* * * ** **** * * ** * * ** * * ** * * * *** * * *
consensus_3684#1 AT--ATTCCGCTTATGTGTA-------TTACAAAAAAACAGAAAATACTGCGCTA----- 128
consensus_3684#2 AT--ATTCCGCTTATGTGTA-------TTACAAAAAAACAGAAAATACTGCGCTA----- 378
consensus_3684#0 ATTGATTCCANTTTNTGGAACAACACTTTACAACAATTTGGACACGAACCAACTAACACA 412
** ***** ** * * ****** ** ** * * ***
consensus_3684#1 --TATTTTGCTTATATGTATGCTCGAATCACGTGTTTTGGCGAACCTTTAGTGCGATACA 186
consensus_3684#2 --TATTTTGCTTATATGTATGCTCGAATCACGTGTTT-GGCGAACCTTTAGTGCGATACA 435
consensus_3684#0 GCTGNGCCACAACAATTTANCTTAGGACAATTTGNGNCGGCGAGNGNTGCACG-GCCGGA 471
* * ** ** * * * * ** ***** * * * *
consensus_3684#1 GTTAATGCAATCAATCTCTTAACCAGTTC-TGAATGTTTAGGATACTGTTACACGATAAG 245
consensus_3684#2 GTTAATGCAATCAATCTCTTAACCAGTTC-TGAATGTTTAGGATACTGTTACACGATAAG 494
consensus_3684#0 CGTTACACAANACTTTAAACAACCGGTTGGTTAAAGTTAANGCCTTCGGAAAAGGACAAA 531
* * *** * **** *** * ** *** * * * * * ** **
consensus_3684#1 CAAG---CTTCTGATATGTACTCACAAAGCCATGAAT-TATACACACACACACTC---CC 298
consensus_3684#2 CAAG---CTTCTGATATGTACTCACAAAGC-ATGAAT-TATACACACACACACTC---CC 546
consensus_3684#0 CATTACCCATTTGTTAAGAACACAGAGGCAGGTGGGTCTATATCCANAAATAACNGGTTC 591
** * * ** ** * ** ** * ** * **** ** * * * *
consensus_3684#1 AGCCTATATTATTCTGTAACAAAACACAA---TATATACGTGCATATATATA-----TAC 350
consensus_3684#2 AGCCTATATTATTCTGTAACAAAACACAA---TATATACGTGCATATATATA-----TAC 598
consensus_3684#0 CACGGGAGCGGAACAGGGGTGGAACCCGNGGACGCTTACGCGTTAACTTGGAACCTTTGG 651
* * * *** * **** * * * * *
consensus_3684#1 ACACAGATCTTGCAACAAAACGGAAATTTTGCTATTAATAGCCCCACAATGTTATGCCAG 410
consensus_3684#2 ACACAGATCTTGAAAAAAA--GGAAATTTTGCTATTAATAGCCCCAC------------- 643
consensus_3684#0 AAACACATTTAACACGGAAAAGGAAATAA-GCAAGAAACA-CCCCACAAGGAACCACACA 709
* *** ** * * ** ****** ** * ** * ******
consensus_3684#1 TCGTATATACATCTATTCTTGTATGATCATTTGANACATCAAATGAAACCANCAAGGCAA 470
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 CAACAACCACGCGCAAGGACATTACACCNACAGGGACAGGCTTTTGGCACACACCAGGTG 769
consensus_3684#1 CATACATGANTGCGCGGGGGCAGCNGAGTACANACTAACACGTGTAGTACCTGAANGAAN 530
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 GGGGAATTTAACCGCGGACCAAGAGGGACTTCCCCGGCTTGGACCGGNAATTGGGAATTC 829
consensus_3684#1 TCATTNACGAAGANGTCTCCCAATCGTCCGNCGGGACAGGGACCGAGAGGTACTGACCTG 590
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 CTTTATACTNACTTTTGGAACTTTAAGACACCACANCAAGGTTATAAAGCTNACACATAG 889
consensus_3684#1 ACAACTAACGACCGAAANNAANCNAGACCAAAAAACACCAGAAGAATAACCANGAG---- 646
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 NCGACTTTGGNGTTCCTTAACACCACCCTTCTATTCCCCGGTNGAAGCTACACCACACCT 949
consensus_3684#1 TNTGANAACACGGGCGACATNACGCGCAACAGGAATCGGTGCGAATTGATCCTCTCATCA 706
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 TTGGGTAACCAGACGCNTTNAATTCTCAANAACGCCCTGGGCAAACAGGCTTNAACATCN 1009
consensus_3684#1 NNTGACTACGACCAACANAGTAAACTAACTACNCATGGCT------CCTACACAACCTTA 760
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 TTGGGCCAAAAAAAGCACAAGTCAAANCCAAANCTGGGCTGGCNTCCCCATACAACAATN 1069
consensus_3684#1 CTCCCGCNACNCTCAACATTGTNACAACACCATTNCAAAGACATTGCGAACAAGCTACAT 820
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 CTCTCGCAGNAGTCAACAGGNGGTGGTTACGGCACCNACTTTGGTCATTACACTAACCAA 1129
consensus_3684#1 NG---------------------------------------------------------- 822
consensus_3684#2 ------------------------------------------------------------
consensus_3684#0 CNCCCAAGANACAGGAAAACACCAGCANTAATTAATCCGGGCATTATTAAACTCCATCGG 1189
consensus_3684#1 -----------------------------------------------
consensus_3684#2 -----------------------------------------------
consensus_3684#0 TCTAANCACTTTGGCATGCCCCAACAGAACCCCCAAACAACAATCTC 1236
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||