cluster # 3689

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Anopheles gambiae
cluster # 3689 cluster # 3689 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3689#0 length = 783 sequences # 1

consensus_3689#1 length = 740 sequences # 1
consensus_3689#2 length = 574 sequences # 1

consensusID : consensus_3689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 783
fasta sequence

                              [ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGGATAAGGGCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAATGTAAAAGCCGTAGCAATGATGATTGGATGCTAGCAGCATATGTTTGTTTGACACACACAACATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAATGGAAAATGAAGACTCACACACATACACAGTTTCGGTAAGCCAGTGACGCTGTAACTGCTTTACACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGTAATGCGCAGGAAGAAAGCACGTGGAGCTCTTCCAGGAGCACCACATGTTACTGTTACCACTGAAGGATGCAATCACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCACACTCTGTTCCCTCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGGTAGAAGGATCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTACTAGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACCGTGAGAAAATATGTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTT]

[+] EMBL BX612655             [ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGGATAAGGGCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAATGTAAAAGCCGTAGCAATGATGATTGGATGCTAGCAGCATATGTTTGTTTGACACACACAACATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAATGGAAAATGAAGACTCACACACATACACAGTTTCGGTAAGCCAGTGACGCTGTAACTGCTTTACACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGTAATGCGCAGGAAGAAAGCACGTGGAGCTCTTCCAGGAGCACCACATGTTACTGTTACCACTGAAGGATGCAATCACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCACACTCTGTTCCCTCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGGTAGAAGGATCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTACTAGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACCGTGAGAAAATATGTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTT]




>consensus_3689#0
ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAG
CAAGGGATAAGGGCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAAT
GTAAAAGCCGTAGCAATGATGATTGGATGCTAGCAGCATATGTTTGTTTGACACACACAA
CATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAATGG
AAAATGAAGACTCACACACATACACAGTTTCGGTAAGCCAGTGACGCTGTAACTGCTTTA
CACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGTAAT
GCGCAGGAAGAAAGCACGTGGAGCTCTTCCAGGAGCACCACATGTTACTGTTACCACTGA
AGGATGCAATCACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCACACTCTGTTCCC
TCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGGTAGAAGGATCTT
CAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGAC
GTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTACT
AGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACCGTGAGAAAATAT
GTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCG
TTT

consensusID : consensus_3689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence

                              [CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTATATACACTCATTATTACGTTTGAACAAATGACGTTGATTGAATAGATTCATCAGCAATAATAAACAATTGTGATAATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGCGCATAAGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATCGGAATGCAATGCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGCATCATGCTTATGGTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANCAACGCGGAGAAGAAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACNNCGCACCTCCACACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGCNAACTCGCTCCCCACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCNAGCAGAGCTACACACCCTAAAAACNAAAAACTGGCGCACANACAGGGGCCAACGACAACACANGACACGCCAACACGNACAGGAANAAGGCCCACGGGAGAGACAGCGTCATACACCACAGGGCAGCCANCCCCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACGACGACNNGCACCACACCAACCANAGGAGANNAAATA]

[+] EMBL AL692495             [CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTATATACACTCATTATTACGTTTGAACAAATGACGTTGATTGAATAGATTCATCAGCAATAATAAACAATTGTGATAATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGCGCATAAGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATCGGAATGCAATGCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGCATCATGCTTATGGTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANCAACGCGGAGAAGAAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACNNCGCACCTCCACACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGCNAACTCGCTCCCCACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCNAGCAGAGCTACACACCCTAAAAACNAAAAACTGGCGCACANACAGGGGCCAACGACAACACANGACACGCCAACACGNACAGGAANAAGGCCCACGGGAGAGACAGCGTCATACACCACAGGGCAGCCANCCCCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACGACGACNNGCACCACACCAACCANAGGAGANNAAATA]




>consensus_3689#1
CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTATATACACTCATTATTACGTTTGAACA
AATGACGTTGATTGAATAGATTCATCAGCAATAATAAACAATTGTGATAATACAATACAT
ACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGCAAGGCGCATA
AGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATCGGAATGCAAT
GCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGCATCATGCTTATG
GTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANCAACGCGGAGAAG
AAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACNNCGCACCTCCAC
ACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGCNAACTCGCTCCC
CACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCNAGCAGAGCTACA
CACCCTAAAAACNAAAAACTGGCGCACANACAGGGGCCAACGACAACACANGACACGCCA
ACACGNACAGGAANAAGGCCCACGGGAGAGACAGCGTCATACACCACAGGGCAGCCANCC
CCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACGACGACNNGCACCACAC
CAACCANAGGAGANNAAATA

consensusID : consensus_3689#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 574
fasta sequence

                              [CCGCGGACGCGTGGGCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGCATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTCCCCAGCGTGAACAATGATATGTCTAGCTAAATGATACACAAATTTCGAACCGTGAGAAAATATGTGTGTGAAAGAGAGAGGGAGAGAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACGAACCAGGTGACAAAAGTGGCACGACACAAACTTACAACAACCAACACTAGAACAAGATCAACAAAGCAGTAAAAGCATCTCTTTCTCACGCTCTAACTCTTAGCTATCCCTAGCGATTGATACCCAACCCAATGATTGGCCATTAGGGGAAAGTAAACTACCATACCATCTCTTGTTGTCTTTTAAAACAAAACAAAAAGCTCTACGTGTGTATAAAACTACAAGTCAAAAGGTAAAGACAAAACTCCAAACTATTGCCATTAATTCTGCGCAAATAAG]

[+] EMBL BM627445             [CCGCGGACGCGTGGGCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTGGTTGATCAGGACGCATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAATGTTGAGCTCCCCAGCGTGAACAATGATATGTCTAGCTAAATGATACACAAATTTCGAACCGTGAGAAAATATGTGTGTGAAAGAGAGAGGGAGAGAGAGGGCGATTAGCTCCTTGGCTCCTTCAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACGAACCAGGTGACAAAAGTGGCACGACACAAACTTACAACAACCAACACTAGAACAAGATCAACAAAGCAGTAAAAGCATCTCTTTCTCACGCTCTAACTCTTAGCTATCCCTAGCGATTGATACCCAACCCAATGATTGGCCATTAGGGGAAAGTAAACTACCATACCATCTCTTGTTGTCTTTTAAAACAAAACAAAAAGCTCTACGTGTGTATAAAACTACAAGTCAAAAGGTAAAGACAAAACTCCAAACTATTGCCATTAATTCTGCGCAAATAAG]




>consensus_3689#2
CCGCGGACGCGTGGGCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAAT
ATGCTGGTTGATCAGGACGCATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTC
TTGCAATGTTGAGCTCCCCAGCGTGAACAATGATATGTCTAGCTAAATGATACACAAATT
TCGAACCGTGAGAAAATATGTGTGTGAAAGAGAGAGGGAGAGAGAGGGCGATTAGCTCCT
TGGCTCCTTCAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACGAACCA
GGTGACAAAAGTGGCACGACACAAACTTACAACAACCAACACTAGAACAAGATCAACAAA
GCAGTAAAAGCATCTCTTTCTCACGCTCTAACTCTTAGCTATCCCTAGCGATTGATACCC
AACCCAATGATTGGCCATTAGGGGAAAGTAAACTACCATACCATCTCTTGTTGTCTTTTA
AAACAAAACAAAAAGCTCTACGTGTGTATAAAACTACAAGTCAAAAGGTAAAGACAAAAC
TCCAAACTATTGCCATTAATTCTGCGCAAATAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3689#0      ATACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAG 60
consensus_3689#2      ------------------------------------------CCGCGGACGCGTGGGCTT 18
consensus_3689#1      ------CAGAATCCCCGNGGTTAAGACACGCGTTCAAGTA---TATACACTCATTATTAC 51
                                                                      *  * *      

consensus_3689#0      CAAGGGATAAGG-GCCCGTGATGGGAGCAGGAAGGAGGAATTATGAAGCAATCGAATGAA 119
consensus_3689#2      CAATCTTCCTTCCATCCATTACGGTA-TAGCGAGCAGCA--TAATATGCTGGTTGATCAG 75
consensus_3689#1      GTTTGAACAAATGACGTTGATTGAATAGATTCATCAGCAA-TAATAAACAATTGTGATAA 110
                                            *     *   *  ** *  **  *  *         * 

consensus_3689#0      TGTAAAAGCCGTAGCAATGATGAT-TGGATGCTAGCAGCATATGTTTGTTTGACACACAC 178
consensus_3689#2      GACGCATATTG-ATCACAAACGAT-CGTGCGATCTCGGCACCTATTC--TTGCAATGTTG 131
consensus_3689#1      TACAATACATACAAGAAGACGGAGACGGAGGATGGAGGAAACCGCAAAAGCATAAAAAGC 170
                                  *  *     **   *   * *    * *              *     

consensus_3689#0      AACATTGCAGAATATTGAATGAGAAGCGGAGAAGAAAGTGCTGGGAGAATCGTATGGAAT 238
consensus_3689#2      AGCTCCCCAGCGTGAACAATGATATGTCTAGCT--AAATGATACACAAATT---TCGAAC 186
consensus_3689#1      AAGGCGCATAAGGGCCCGCTGATGGGCAGCAGGCAAGGCAGCGCAATTATGACAGCAATC 230
                      *                  ***   *         *            **       *  

consensus_3689#0      GGAAAATGAAGACTCACACACATACACAGTTTCGGTA-AGCCAGTGACGCTGTAACTGCT 297
consensus_3689#2      CG----TGAGAAAATATGTGTGTGAAAGAGAGAGGGA-GAGAGAGGGCGAT-TAGCTCCT 240
consensus_3689#1      GGAA--TGCAATGCTACACACAGCCGTANCCAATGCATAGATATAGGCATGCTAGCCAGC 288
                       *    **       *                  * *        * *    ** *    

consensus_3689#0      TTACACCCCGTTCGCGGGCAGTCTGAAGGGCTGTGGTACCTAAGAATGCAAATGGTTTGT 357
consensus_3689#2      TGGCTCCTT-----CAAGCAAAGCGTTTGGCAATGATGATGGGAAAAGCGAGCGAACACG 295
consensus_3689#1      ATCATGCTTATGGTTGACCACCACACCACNCCATTGCCACGCACACTATCTGCAATGANC 348
                            *           **          *  *          *               

consensus_3689#0      AATGCGCAGGAAGAAAGCACGTGGAGCTCTTC------CAGGAGCACCACATGTTACTGT 411
consensus_3689#2      AACCAGGTGACAAAAGTGGCACGACACAAACT------TACAACAACCA-ACACTAGAAC 348
consensus_3689#1      AACGCGGAGAAGAAAGTCGCTCGGCGAGAATCGCAACTNGGCAATAGGAANCANCGCACN 408
                      **   *  *    **    *  *                   *  *  *           

consensus_3689#0      TACCACTGAAGGATGCAAT-CACTGGATCTTTTCTTCCACCATAACTTCAAGACTTCA-- 468
consensus_3689#2      AA--GATCAACAAAGCAGT-AAAAGCATCTCTTTCTC------------ACGCTCTAA-- 391
consensus_3689#1      NCGCACCTCCACACACNATACACCACGCCCCCGCGCCNCNNCCAGCAGACAGCCCTAAGC 468
                                  *  *  *  *      *       *              *   * *  

consensus_3689#0      CACTCTGTTCCCTCTATCGCAAAACACTCTCTTCCACTGGTACCTTCTACCTTTCCCGGG 528
consensus_3689#2      CTCTTAGCTATCCCTAGCGATTGATACCCAACCCAATGATTGGCCATTAGGGGA---AAG 448
consensus_3689#1      NAACTCGCTCCCCACCACCCCCGCCACCCGCCNCGNCCAGCCCCCGACACGCAGCGACCN 528
                            * *  *     *       ** *    *         *    *           

consensus_3689#0      TAGAAGGATCTTCAATCTTCCTTCCATCCATTACGGTATAGCGAGCAGCATAATATGCTG 588
consensus_3689#2      TAAACTACCATACCATCT-CTTGTTGTCTTTTAAAACAAAACAAAAAGCTCTACGTGTGT 507
consensus_3689#1      AGCAGAGCTACACACCCTAAAAACNAAAAACTGGCGCACANACAGGGGC-CAACGACAAC 587
                         *        *   **             *     * *   *   **   *       

consensus_3689#0      GTTGATCAGGACGTATATTGATCACAAACGATCGTGCGATCTCGGCACCTATTCTTGCAA 648
consensus_3689#2      ATAAAACTACAAGTCAAAAGGTAAAGACAAAACTCCAAACTATTGCCATTAATTCTGCGC 567
consensus_3689#1      ACANGACACGCCA-ACACGNACAGGAANAAGGCCCACGGGAGAGACAGC--GTCATACAC 644
                            *         *         *     *            *      *  * *  

consensus_3689#0      TGTTGAGCTACTAGCGTGAACAATGATATGTCTAGCTAAATGATACATAAATTCCGAACC 708
consensus_3689#2      AAATAAG----------------------------------------------------- 574
consensus_3689#1      CACAGGGCAGCCANCCCCACCAATGCTACAACCNGACAAACCCCACACACTAGCAACACG 704
                            *                                                     

consensus_3689#0      GTGAGAAAATATGTGTGTGAAAGAGAAAGGAGATAGAGGGCGATTAGCTCCTTGGCTCCT 768
consensus_3689#2      ------------------------------------------------------------
consensus_3689#1      ACGACNNGCACCACACCAACCANAGGAGANNAAATA------------------------ 740
                                                                                  

consensus_3689#0      TCAAGCAAAGCGTTT 783
consensus_3689#2      ---------------
consensus_3689#1      ---------------