cluster # 3698

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Anopheles gambiae
cluster # 3698 cluster # 3698 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3698#0 length = 644 sequences # 1

consensus_3698#1 length = 629 sequences # 1
consensus_3698#2 length = 501 sequences # 1

consensusID : consensus_3698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGTAAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGACAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTATCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAGTGGGGAAATCTTTCGCTCGCTGTACATGA]

[+] EMBL BM613438             [CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGTAAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGACAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTATCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAGTGGGGAAATCTTTCGCTCGCTGTACATGA]




>consensus_3698#0
CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGT
AAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGC
CACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCG
GATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCC
GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGA
CAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTT
CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGC
GTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGC
GGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTA
TCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGA
AGAATGGATGGCGAGTGGGGAAATCTTTCGCTCGCTGTACATGA

consensusID : consensus_3698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGTAAGTAATTTGCTCCAAAATACCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAACAGTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGCAAGAATGGATGGCGAGTGGGGAAATCTTTTCGCTCGCTGTACATGAACTC]

[+] EMBL BM597408             [CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGTAAGTAATTTGCTCCAAAATACCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAACAGTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGCCCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGCAAGAATGGATGGCGAGTGGGGAAATCTTTTCGCTCGCTGTACATGAACTC]




>consensus_3698#1
CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGTAAGTAATTTGCTCCAAAATA
CCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGCCACTCGACAGAACCGGGTCCC
GATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTTCTGTT
TCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTG
TTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAACA
GTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTT
GAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGCGTGTGCAATCGAGTCGGCTGC
CCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAA
CCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTA
CGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGCAAGAATGGATGGCGAGTGGGG
AAATCTTTTCGCTCGCTGTACATGAACTC

consensusID : consensus_3698#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GAATCCCCCGAGGTTNGACAGAACGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGCCCGACAAGCGTGTGCAATAGAGTCGGTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACACACGACACAGCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAG]

[+] EMBL AL692593             [GAATCCCCCGAGGTTNGACAGAACGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCGGATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACAGCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGACAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGCGTCCGACGATGGGCGTAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGCCCGACAAGCGTGTGCAATAGAGTCGGTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGCGGCTCCGGTTGGCTTCCGGAACACACGACACAGCAATCCTTGACGCACTGCTTGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGAAGAATGGATGGCGAG]




>consensus_3698#2
GAATCCCCCGAGGTTNGACAGAACGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGAT
ACAAACGGCGGATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACA
GCTGCATTCCGGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTG
CCGCCGGGGACAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGCGTCCGACGATGGGCG
TAACATCTTCTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGC
CCGACAAGCGTGTGCAATAGAGTCGGTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTA
CTGTTTGCGGCTCCGGTTGGCTTCCGGAACACACGACACAGCAATCCTTGACGCACTGCT
TGAGTATCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCC
GCTGGAAGAATGGATGGCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3698#1      --------------------CCGCCCACGCGTCCGAGTGAATCATTTTGTAAAGAGATGT 40
consensus_3698#2      ------------------------------------------------------------
consensus_3698#0      CCGGTTTATGTTATTTACTTTGGCAGTATCGTATCAGTGAATCATTTTGTAAAGAGATGT 60
                                                                                  

consensus_3698#1      AAGTAATTTGCTCCAAAA-TACCGTTTTGCGACACGCATCGAGGTGCATAGTGTGGTCGC 99
consensus_3698#2      -------------------------------------------------GAATCCCCCGA 11
consensus_3698#0      AAATAATTTGCTCCAAAAATACCGTTTTGCGTCACGCATCGAGGTGCATAGTGTGGTCGC 120
                                                                               ** 

consensus_3698#1      CACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCG 159
consensus_3698#2      GGTTNGACAGAAC-GGGTCCCGATGTCTTTCTGGCTGCAACCGATGCGATACAAACGGCG 70
consensus_3698#0      CACTCGACAGAACCGGGTCCCGATGTCTTTCTGGCTACAACCGATGCGATACAAACGGCG 180
                         * ******** ********************** ***********************

consensus_3698#1      GATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCC 219
consensus_3698#2      GATCGTGTACGTGTTCCTGTTTCTTTCGGCCGCACTATACATCCTGTACAGCTGCATTCC 130
consensus_3698#0      GATCGTGTACGTGTTTCTGTTTCTTTCGGCCGCACTCTACATCCTGTACAGCTGCATTCC 240
                      *************** ******************** ***********************

consensus_3698#1      GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGA 279
consensus_3698#2      GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCGGGGACAGCTTTGCCGCCGGGGA 190
consensus_3698#0      GGATCCGCCGATACACAACTGTTTCCAGATCGTCCCCAGGGACAGCTTCGCCGCCGGCGA 300
                      ************************************* ********** ******** **

consensus_3698#1      CAGCTTGGACGATGTGCAACAGTCCATGCCGCAGCCGTCCGACGATGGGCGTAACATCTT 339
consensus_3698#2      CAGCTTGGACGATGTGCAGCAGTCCATGCCGCAGC-GTCCGACGATGGGCGTAACATCTT 249
consensus_3698#0      CAGCTTGGACGATGTGCAGCAGTCTGTGCCGCAGCCGTCCGACGAGGGGCGTAACATCTT 360
                      ****************** *****  ********* ********* **************

consensus_3698#1      CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGC 399
consensus_3698#2      CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGCCTGAACGCCCGACAAGC 309
consensus_3698#0      CTTTCACGAAACATCCTGCTTGAAGGAGGACGGTATTGTGCGGCTGAACGCCCGACAAGC 420
                      ****************************************** *****************

consensus_3698#1      GTGTGCAATCGAGTCGGCTGCCCGGGCCAACCCGGAGTGGAACGTGTACGTACTGTTTGC 459
consensus_3698#2      GTGTGCAATAGAGTCGG-TGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGC 368
consensus_3698#0      GTGTGCAATCGAGTCGGCTGCCCGGGCCAATCCGGAGTGGAACGTGTACGTACTGTTTGC 480
                      ********* ******* ************ *****************************

consensus_3698#1      GGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTTGAGTA 519
consensus_3698#2      GGCTCCGGTTGGCTTCCGGAAC-ACACGACACAGC-AATCCTTGACGCACTGCTTGAGTA 426
consensus_3698#0      GGCTCCGGTTGGCTTCCGGAACCACACGACACAGCCAATCCTTGACGCACTGCTCGAGTA 540
                      ********************** ************ ****************** *****

consensus_3698#1      TCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGGC 579
consensus_3698#2      TCGCAATGTGCATCTGCGGTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGG- 485
consensus_3698#0      TCGTAATGTGCATCTGCGCTACGTCAACTTGACCACATACGCGAACGAAACTCCGCTGG- 599
                      *** ************** **************************************** 

consensus_3698#1      AAGAATGGATGGCGAGTGGGGAAATCTTTTCGCTCGCTGTACATGAACTC 629
consensus_3698#2      AAGAATGGATGGCGAG---------------------------------- 501
consensus_3698#0      AAGAATGGATGGCGAGTGGGGAAATCTTT-CGCTCGCTGTACATGA---- 644
                      ****************