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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1176 fasta sequence
[CCGGACGAATCGGTCGTGCTGGAGATGAACAATGGCAATGGCCGCATCCATCGGGATAGTCTGCTGGGGCTGAGTGAGCCACTGCCCCGGCTGGACCACTACCGGGCATCGCAGCGCAATGCCAAGCGGCCGTCGATCGGGGTGCTGCACGGCGATCGCGACTCGAAGGCCGGCGGCGAACCGGAGGAACTGCTCGAGGAGGAAGCGAAAGCGCCGGGCCACGCGATCCGGCTCGGCTGGGTGCAGGGTGTGCTCATACCCTGCCTGCTCAACATCTGGGGCGTGATGCTGTTCCTGCGCCTCAGCTGGGTCGTCGGGCAGGCCGGCATCGTGCAGACGCTGATCATCATCGCGCTCTCGTACGTGGTGTGCGTCATGACCACGCTGTCCCTGTCGGCGCTCTGCACGAACGGCCAGATCAAGAGCGGCGGCCTGTACTACATCATCTCCCGGTCGCTCGGTGCCGAGTTCGGGGCGTCGGTCGGTATCGTGTTCGCGTTTGCCAACTCGGTTAACGCGGCCATGAACACGATCGGTTTCTGCAGCTCGCTCAACG-ATCTGCTGCGAAGCCTCAATACGAAGATCGTCGACGGTGGCGTGAACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAAGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGTCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGACTTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGC]
[+] EMBL BM608535 [CCGGACGAATCGGTCGTGCTGGAGATGAACAATGGCAATGGCCGCATCCATCGGGATAGTCTGCTGGGGCTGAGTGAGCCACTGCCCCGGCTGGACCACTACCGGGCATCGCAGCGCAATGCCAAGCGGCCGTCGATCGGGGTGCTGCACGGCGATCGCGACTCGAAGGCCGGCGGCGAACCGGAGGAACTGCTCGAGGAGGAAGCGAAAGCGCCGGGCCACGCGATCCGGCTCGGCTGGGTGCAGGGTGTGCTCATACCCTGCCTGCTCAACATCTGGGGCGTGATGCTGTTCCTGCGCCTCAGCTGGGTCGTCGGGCAGGCCGGCATCGTGCAGACGCTGATCATCATCGCGCTCTCGTACGTGGTGTGCGTCATGACCACGCTGTCCCTGTCGGCGCTCTGCACGAACGGCCAGATCAAGAGCGGCGGCCTGTACTACATCATCTCCCGGTCGCTCGGTGCCGAGTTCGGGGCGTCGGTCGGTATCGTGTTCGCGTTTGCCAACTCGGTTAACGCGGCCATGAACACGATCGGTTTCTGCAGCTCGCTCAACG ATCTGCTGCGAAGCCTCAATACGAAGATCGTCGACGGTGGCGTGAACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAAGCCCAGA ]
[+] EMBL BM649306 [ cCGC CCACGCGTCCGCAG GAAGCCTCAATACGAAGATCGTCGACGGTGGCGTGAACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGTCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGACTTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGC]
consensusID : consensus_3708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CCGCCCACGCGTCCGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGGCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGATTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGCCGGCTGCTGGGCGGCAACGCTCAGTACCGCCCTCACGAACATCCTCTCCGTACCGCGGCTGATCCAGGCGCTCGGCATCGATCGCATCTATCCCGGGCTGATCT]
[+] EMBL BM610104 [CCGCCCACGCGTCCGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGGCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGATTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGCCGGCTGCTGGGCGGCAACGCTCAGTACCGCCCTCACGAACATCCTCTCCGTACCGCGGCTGATCCAGGCGCTCGGCATCGATCGCATCTATCCCGGGCTGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3708#0 CCGGACGAATCGGTCGTGCTGGAGATGAACAATGGCAATGGCCGCATCCATCGGGATAGT 60
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 CTGCTGGGGCTGAGTGAGCCACTGCCCCGGCTGGACCACTACCGGGCATCGCAGCGCAAT 120
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 GCCAAGCGGCCGTCGATCGGGGTGCTGCACGGCGATCGCGACTCGAAGGCCGGCGGCGAA 180
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 CCGGAGGAACTGCTCGAGGAGGAAGCGAAAGCGCCGGGCCACGCGATCCGGCTCGGCTGG 240
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 GTGCAGGGTGTGCTCATACCCTGCCTGCTCAACATCTGGGGCGTGATGCTGTTCCTGCGC 300
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 CTCAGCTGGGTCGTCGGGCAGGCCGGCATCGTGCAGACGCTGATCATCATCGCGCTCTCG 360
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 TACGTGGTGTGCGTCATGACCACGCTGTCCCTGTCGGCGCTCTGCACGAACGGCCAGATC 420
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 AAGAGCGGCGGCCTGTACTACATCATCTCCCGGTCGCTCGGTGCCGAGTTCGGGGCGTCG 480
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 GTCGGTATCGTGTTCGCGTTTGCCAACTCGGTTAACGCGGCCATGAACACGATCGGTTTC 540
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 TGCAGCTCGCTCAACGATCTGCTGCGAAGCCTCAATACGAAGATCGTCGACGGTGGCGTG 600
consensus_3708#1 ------------------------------------------------------------
consensus_3708#0 AACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTC 660
consensus_3708#1 --------------------------CCGCCCAC-GCGTCCGATCATCATCTGCGCCGTC 33
* * * ** *******************
consensus_3708#0 GGCATGGACTGGGAGGTGAAAGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATC 720
consensus_3708#1 GGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATC 93
******************** ***************************************
consensus_3708#0 TTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAG 780
consensus_3708#1 TTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAG 153
************************************************************
consensus_3708#0 GGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTG 840
consensus_3708#1 GGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTG 213
************************************************************
consensus_3708#0 ATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACG 900
consensus_3708#1 ATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACG 273
************************************************************
consensus_3708#0 GGCATCCAGAGCGGGTCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCG 960
consensus_3708#1 GGCATCCAGAGCGGGGCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCG 333
*************** ********************************************
consensus_3708#0 AAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATG 1020
consensus_3708#1 AAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATG 393
************************************************************
consensus_3708#0 GCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACC 1080
consensus_3708#1 GCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACC 453
************************************************************
consensus_3708#0 TTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGACTTACACGGTGAT 1140
consensus_3708#1 TTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGA-TTACACGGTGAT 512
*********************************************** ************
consensus_3708#0 GCAGCTCATTTCGCTGACCAGCGCGATCACGTACGC------------------------ 1176
consensus_3708#1 GCAGCTCATTTCGCTGACCAGCGCGATCACGTACGCCGGCTGCTGGGCGGCAACGCTCAG 572
************************************
consensus_3708#0 ------------------------------------------------------------
consensus_3708#1 TACCGCCCTCACGAACATCCTCTCCGTACCGCGGCTGATCCAGGCGCTCGGCATCGATCG 632
consensus_3708#0 --------------------
consensus_3708#1 CATCTATCCCGGGCTGATCT 652
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||