cluster # 3709

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Anopheles gambiae
cluster # 3709 cluster # 3709 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3709#0 length = 706 sequences # 2

consensus_3709#1 length = 393 sequences # 1

consensusID : consensus_3709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 706
fasta sequence

                              [CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAATACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGGAGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAACAAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTAGACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGCGGTTTACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATA-GTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTTGGTTTTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGACGTGTCCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG]

[+] EMBL BM585438             [CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAATACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGGAGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAACAAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTAGACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGCGGTTTACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATA GTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTTGGTTTTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGACGTGTCCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG]
[+] EMBL BM585583             [                                                                                                                                                                          ccgGGGAAACAAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTAGACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGA TTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATT GCGGTTTACAGTTCTTGATC  GT AGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGGTGTGTAGTAACGAAAGCTTAGTTGTATT AGTGAGTAGGG                                                                                                                   ]




>consensus_3709#0
CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAAT
ACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGG
AGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAAC
AAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTA
GACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCG
CCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAA
TCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGT
TTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGCGGTT
TACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTG
TGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTTGGTT
TTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGACGTGT
CCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG

consensusID : consensus_3709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [TCCCCGAGTTAACGGAACTATAGACTAGATATAGACTCACACACGGGAGAAGGCAGCAGTTCGCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTGGTTTTACGTTTAAATTTTTCGGTTTATTTGTTTATTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGCGGTTTACAGTTCTTGATCGTAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAGTGAGTAGGGTCTTGTTAAGTAG]

[+] EMBL AL692751             [TCCCCGAGTTAACGGAACTATAGACTAGATATAGACTCACACACGGGAGAAGGCAGCAGTTCGCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTGGTTTTACGTTTAAATTTTTCGGTTTATTTGTTTATTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGCGGTTTACAGTTCTTGATCGTAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAGTGAGTAGGGTCTTGTTAAGTAG]




>consensus_3709#1
TCCCCGAGTTAACGGAACTATAGACTAGATATAGACTCACACACGGGAGAAGGCAGCAGT
TCGCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCCTTTCATCCTACATAGACTGATTGT
ACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTGGTTT
TACGTTTAAATTTTTCGGTTTATTTGTTTATTGTTTGTTAATGCTGCAGTGCTTTAGGGA
AGGTATATGCGCTTCGTTGATACGATTGCGGTTTACAGTTCTTGATCGTAGGGTTTGTTT
TTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTT
AGTTGTATTAGTGAGTAGGGTCTTGTTAAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3709#0      CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAAT 60
consensus_3709#1      ------------------------------------------------------------
                                                                                  

consensus_3709#0      ACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGG 120
consensus_3709#1      ------------------------------------------------------------
                                                                                  

consensus_3709#0      AGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAAC 180
consensus_3709#1      ------------------------------------------------------------
                                                                                  

consensus_3709#0      AAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTA 240
consensus_3709#1      ---------------------TCCCCGAGTTAACGGAACTATAG----ACTAGAT--ATA 33
                                           *     **  *** * *  ***     ******    **

consensus_3709#0      GACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCG 300
consensus_3709#1      GACTCACACACGGGAGAA-GGCAGCAGTTCGCCC-GGCATCAAAGCTCGTGGTGAAACCG 91
                      ****************** ** ************ *************************

consensus_3709#0      CCCC-TTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGA 359
consensus_3709#1      CCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGA 151
                      **** *******************************************************

consensus_3709#0      ATCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCG-TTTATTTGTTT- 417
consensus_3709#1      ATCAAAGAAATCAAAGCTGAGATT-GGTTTTACGTTTAAATTTTTCGGTTTATTTGTTTA 210
                      ************************ ********************** *********** 

consensus_3709#0      -TGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGC 476
consensus_3709#1      TTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTG-C 269
                       ********************************************************* *

consensus_3709#0      GGTTTACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAA 536
consensus_3709#1      GGTTTACAGTTCTTGATC--GTA-GGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAA 326
                      ******************  *** ************************************

consensus_3709#0      TTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTT 596
consensus_3709#1      TTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTA-GTGAGTAGGG-TCTT 384
                      ******************************************** **********  ***

consensus_3709#0      GGTTTTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGAC 656
consensus_3709#1      G--TTAAGTAG------------------------------------------------- 393
                      *  **  **                                                   

consensus_3709#0      GTGTCCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG 706
consensus_3709#1      --------------------------------------------------