cluster # 3717

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Anopheles gambiae
cluster # 3717 cluster # 3717 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3717#0 length = 689 sequences # 1

consensus_3717#1 length = 689 sequences # 2

consensusID : consensus_3717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAAACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGAAGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGGGGATCCTT]

[+] EMBL BM608298             [CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAAACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGAAGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGGGGATCCTT]




>consensus_3717#0
CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAA
ACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGA
AGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAA
TGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTG
GCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAAT
ACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCC
TAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGAT
ATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAA
AGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAA
GTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCAC
TTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTT
GTAAATGTTATTATCCACGGGGGATCCTT

consensusID : consensus_3717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence

                              [CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCAAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTACACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGCTCAGTGTGGAGTAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCTTCAAAAATGACGAGAAGGAGGATCGTTTAACGATCATCGCACGTGTC]

[+] EMBL BM642351             [CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCAAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTATCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAAAGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTACACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGCTCAGTGTGGAGTAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCTTCAAAAATGACGAGAAGGAGGATCGTTTAACGATCATCGCACGTGTC]
[+] EMBL BX603189             [                                                                                                                                                                                                                                                                                                                                    gAAGCATCAAACAAAAACAAAAGACATCAAACCTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTAAACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCACTGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGC                                                                                                    ]




>consensus_3717#1
CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAATGAAGTCGCGAGCGA
GATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTGGCTCTCAGTAGCCAG
CATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAATACTTGATTTTAATCT
CTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCCTAACGGCAAAAAGAG
CGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGATATCGTTATGGACGTA
TCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAAAGACATCAAAACTTT
TACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAAGTACACACGTGTCCG
GAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCACTTAACACATTACCAC
TGTTAATTCTGAAAAAAACCCAACTTGTAATGGGATTTGTTTGTAAATGTTATTATCCAC
GGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCTCGAGCGCTCAGTGTGGAG
TAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCTTCAAAAATGACGAGAAGG
AGGATCGTTTAACGATCATCGCACGTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3717#0      CCGGCGGCTACTGGCTACCGGGAATAGAGGAGCATCGTCCATCGTCCTCCAGTGCATCAA 60
consensus_3717#1      ------------------------------------------------------------
                                                                                  

consensus_3717#0      ACACCAAGGATTCTTCTTTCGACCTATGTTCCTTTCAGGGCTCCCATCTGTCTTTCCTGA 120
consensus_3717#1      ------------------------------------------------------------
                                                                                  

consensus_3717#0      AGCTTCCCCCTCACACAAAACAAAAAAAAACTCACCCAAGCACACACATACACAGACAAA 180
consensus_3717#1      ---------------CCGCGGACGCGTGGGCTCACCCAAGCACACACATACACAGACAAA 45
                                     *     *        ******************************

consensus_3717#0      TGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTG 240
consensus_3717#1      TGAAGTCGCGAGCGAGATCGATCGTGGCCATACACCGTCCGTAGCCGGATGGTGGTGCTG 105
                      ************************************************************

consensus_3717#0      GCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAAT 300
consensus_3717#1      GCTCTCAGTAGCCAGCATGACCATCCTGCCGCGTGCTTCGGTGTCGGGATTACTCATAAT 165
                      ************************************************************

consensus_3717#0      ACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCC 360
consensus_3717#1      ACTTGATTTTAATCTCTAGCAGGGACTAGAGAAGATCGCCCAATCGTTCGACCACTTTCC 225
                      ************************************************************

consensus_3717#0      TAACGGCGAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGAT 420
consensus_3717#1      TAACGGCAAAAAGAGCGGAAAAGTATTGCTTAGCTGCGGCCCAAAGCTGTGCCTCATGAT 285
                      ******* ****************************************************

consensus_3717#0      ATCGTTATGGACGTATCGTTTTTTTAGGAAATGCACTTAAAAGCATCAAACAAAAACAAA 480
consensus_3717#1      ATCGTTATGGACGTATCGTTTTTTTAGGAAATCCACTTAAAAACATCAAACAAAAACAAA 345
                      ******************************** ********* *****************

consensus_3717#0      AGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAA 540
consensus_3717#1      AGACATCAAAACTTTTACAACGATGCCTTTACAACACAGTTGCCTTACTTTTCGACCAAA 405
                      ************************************************************

consensus_3717#0      GTAAACACGTGTCCGTAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCAC 600
consensus_3717#1      GTACACACGTGTCCGGAATGGAACAGATTCTTACGCAAAATCTCAACCAATATGCAGCAC 465
                      *** *********** ********************************************

consensus_3717#0      TTAACACATTACCACTGTTAATTCTGAAAAAAAAAACCCAACTTGTAATGGGATTTGTTT 660
consensus_3717#1      TTAACACATTACCACTGTTAATTCTGAAAAA---AACCCAACTTGTAATGGGATTTGTTT 522
                      *******************************   **************************

consensus_3717#0      GTAAATGTTATTATCCACGGGGGATCCTT------------------------------- 689
consensus_3717#1      GTAAATGTTATTATCCACGGTGTATCCTTTATCCTTTCTGTTTGTTTGTGTTGGGGCGCT 582
                      ******************** * ******                               

consensus_3717#0      ------------------------------------------------------------
consensus_3717#1      CGAGCGCTCAGTGTGGAGTAGCATAAAGGGGCATGTTCTGTTAACTGAATTAGTGTAGCT 642
                                                                                  

consensus_3717#0      -----------------------------------------------
consensus_3717#1      TCAAAAATGACGAGAAGGAGGATCGTTTAACGATCATCGCACGTGTC 689