cluster # 3718

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Anopheles gambiae
cluster # 3718 cluster # 3718 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3718#0 length = 686 sequences # 1

consensus_3718#1 length = 653 sequences # 2

consensusID : consensus_3718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGGCGATCCCACTGTGAAAGCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCTTCCCCCCCGAGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAACGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAAGCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGGAGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCACGGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCTGGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCTGGAAGGGGCTGTTCTATTGTATGTGGATGTCGGACAAGCCGCTGGTGAAGGAGGAGCTGGCCGAGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAGCGATGCAGTTCTTCAAGGCGTTCCTCGTCACCATGGGCAACGAGTGGTTCGGTATTGACCGTTGGCGGTTAGACAAGTTCATGATGCTGGTACGACGGGTAACGCGGCAGGCCATGTTTGCGCTGCACGAAGCCG]

[+] EMBL BM630452             [CCGGCGATCCCACTGTGAAAGCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCTTCCCCCCCGAGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAACGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAAGCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGGAGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCACGGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCTGGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCTGGAAGGGGCTGTTCTATTGTATGTGGATGTCGGACAAGCCGCTGGTGAAGGAGGAGCTGGCCGAGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAGCGATGCAGTTCTTCAAGGCGTTCCTCGTCACCATGGGCAACGAGTGGTTCGGTATTGACCGTTGGCGGTTAGACAAGTTCATGATGCTGGTACGACGGGTAACGCGGCAGGCCATGTTTGCGCTGCACGAAGCCG]




>consensus_3718#0
CCGGCGATCCCACTGTGAAAGCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATC
AAGTGTTTGCAACGATCCTTCCCCCCCGAGCTAGGGTTGTAGTCGTTCTGCACGCCGCCA
AGAGGGGACCCTGCAGCGAACGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTG
CTTGGTGGTGCCAGGCCAAAGCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAAC
GTCGGCAATACCGATGATGGAGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGC
GCAGGAGATCAAGTTCGCACGGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGT
GCTGAAGAATCTAAAGACCTGGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGA
TTTGGACTTTATGCGGCTCTGGAAGGGGCTGTTCTATTGTATGTGGATGTCGGACAAGCC
GCTGGTGAAGGAGGAGCTGGCCGAGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGA
CGTTCCGGTAGCGATGCAGTTCTTCAAGGCGTTCCTCGTCACCATGGGCAACGAGTGGTT
CGGTATTGACCGTTGGCGGTTAGACAAGTTCATGATGCTGGTACGACGGGTAACGCGGCA
GGCCATGTTTGCGCTGCACGAAGCCG

consensusID : consensus_3718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 653
fasta sequence

                              [CCGCCCACGCGTCCGGCGATCCCACTGTGGAAGGTATGGCATGAAAATATCCTGCTCCTAACAAGGGACATAAATTTCCAACAAAAAGAACAGTAAGTGATCGAACACCTTCTCCAAAAGCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCATCCCCCCCGGGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAACGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAAGCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGGAGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCACGGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCTGGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCTGGGAAGGGGCTGTTCTATTGGTATGTGGATGTCGGACAAGCCGCTGGTGCAGGAGGAGCTGGCCGACGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAG]

[+] EMBL BM640194             [CCGCCCACGCGTCCGGCGATCCCACTGTGGAAGGTATGGCATGAAAATATCCTGCTCCTAACAAGGGACATAAATTTCCAACAAAAAGAACAGTAAGTGATCGAACACCTTCTCCAAAAGCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCATCCCCCCCGGGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAACGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAAGCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGGAGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCACGGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCTGGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGC                                                                                                                        ]
[+] EMBL BM608254             [                                                                                           ccgAAGTGATCGAAAACCTTCTCCAAAAGCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCTTCCCCCCCGAGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAACGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAAGCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGGAGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCACGGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCTGGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCTGGGAAGGGGCTGTTCTATTGGTATGTGGATGTCGGACAAGCCGCTGGTGCAGGAGGAGCTGGCCGACGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAG]




>consensus_3718#1
CCGCCCACGCGTCCGGCGATCCCACTGTGGAAGGTATGGCATGAAAATATCCTGCTCCTA
ACAAGGGACATAAATTTCCAACAAAAAGAACAGTAAGTGATCGAACACCTTCTCCAAAAG
CGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCATC
CCCCCCGGGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAAC
GCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAAG
CATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGGA
GGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCACG
GACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCTG
GCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCTG
GGAAGGGGCTGTTCTATTGGTATGTGGATGTCGGACAAGCCGCTGGTGCAGGAGGAGCTG
GCCGACGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3718#0      ------------------------------------------------------------
consensus_3718#1      CCGCCCACGCGTCCGGCGATCCCACTGTGGAAGGTATGGCATGAAAATATCCTGCTCCTA 60
                                                                                  

consensus_3718#0      ----------------------------------------CCGGCGATCCCACTGTGAAA 20
consensus_3718#1      ACAAGGGACATAAATTTCCAACAAAAAGAACAGTAAGTGATCGAACA-CCTTCTCCAAAA 119
                                                               **   * **  **   ***

consensus_3718#0      GCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCTT 80
consensus_3718#1      GCGTCCCTCCGCAATCAGCAGACCGTGTTGCACCGGGATCAAGTGTTTGCAACGATCCAT 179
                      ********************************************************** *

consensus_3718#0      CCCCCCCGAGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAA 140
consensus_3718#1      CCCCCCCGGGCTAGGGTTGTAGTCGTTCTGCACGCCGCCAAGAGGGGACCCTGCAGCGAA 239
                      ******** ***************************************************

consensus_3718#0      CGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAA 200
consensus_3718#1      CGCACGTGTTCACGCGTCAACAACGTCGCTAGCGCTGGTGCTTGGTGGTGCCAGGCCAAA 299
                      ************************************************************

consensus_3718#0      GCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGG 260
consensus_3718#1      GCATGGTAGTCAAAGAGGACACCGCGGACGCGGAAGGAACGTCGGCAATACCGATGATGG 359
                      ************************************************************

consensus_3718#0      AGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCAC 320
consensus_3718#1      AGGACGACGGGAAGCCCGCCAGCAAACGGGCAATCATTGCGCAGGAGATCAAGTTCGCAC 419
                      ************************************************************

consensus_3718#0      GGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCT 380
consensus_3718#1      GGACCCTTGCCGGTAATGATGCTACGATGCGGCGCAGGGTGCTGAAGAATCTAAAGACCT 479
                      ************************************************************

consensus_3718#0      GGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCT 440
consensus_3718#1      GGCTAACCACACGCAGCCAGAGCACGTTCGTTTTTAGCGATTTGGACTTTATGCGGCTCT 539
                      ************************************************************

consensus_3718#0      GG-AAGGGGCTGTTCTATTG-TATGTGGATGTCGGACAAGCCGCTGGTGAAGGAGGAGCT 498
consensus_3718#1      GGGAAGGGGCTGTTCTATTGGTATGTGGATGTCGGACAAGCCGCTGGTGCAGGAGGAGCT 599
                      ** ***************** **************************** **********

consensus_3718#0      GGCCGA-GTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAGCGATGC 557
consensus_3718#1      GGCCGACGTCGCTCGGTTCGCTGGTGCGGTGCTTTGACCATGACGTTCCGGTAG------ 653
                      ****** ***********************************************      

consensus_3718#0      AGTTCTTCAAGGCGTTCCTCGTCACCATGGGCAACGAGTGGTTCGGTATTGACCGTTGGC 617
consensus_3718#1      ------------------------------------------------------------
                                                                                  

consensus_3718#0      GGTTAGACAAGTTCATGATGCTGGTACGACGGGTAACGCGGCAGGCCATGTTTGCGCTGC 677
consensus_3718#1      ------------------------------------------------------------
                                                                                  

consensus_3718#0      ACGAAGCCG 686
consensus_3718#1      ---------