cluster # 3719

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Anopheles gambiae
cluster # 3719 cluster # 3719 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3719#0 length = 641 sequences # 1

consensus_3719#1 length = 604 sequences # 2

consensusID : consensus_3719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [GCCCGAGGTTTANATCACGAGTGGTGGTACCGCTGGAANCTGGACCGGTACACCATCACGTACGTGGATGATCTTTGCGGCGATCTTTCAAATCTCCCAACGGTTCGCCGTGGTGGATGACAATAATCATGGCAATTTGTTTTCGAAACTGAATCTCGCTAACGTCCACGCTGGCCTGCCATCACCGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCGCAACCTGGCACGGACCTTGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCCCGAATCGTGGGGGTACATCCTGCTTGNGCAACATTTCCGGCATNACTTGAGCACCCNGCTACTACGACGTTCTTCGCCTGGTTTGGCCAAGATCTCGCTCGAGCTGTTCCTCTGACAGTACCACATACTGGCTTGGCGGCGGACCGGACACGGCGGATGCTGGTGCTGCGTAGCCCGGNCTNTATACCCACGCTGAACGTGCTGATAAACGTACGTTCATANNNATCGTGTGCCGTATACCGCACGAGATTCATNCGCGNTTAACGAGCGTGCTGCTGCCGTACGCGGTACCGAACCGACTGGNAAGCTAGCGCTAAGGAATCATTCGTAGTACTATCGTGATACTAGTCATACCGTAAGAGGCCG]

[+] EMBL AL692914             [GCCCGAGGTTTANATCACGAGTGGTGGTACCGCTGGAANCTGGACCGGTACACCATCACGTACGTGGATGATCTTTGCGGCGATCTTTCAAATCTCCCAACGGTTCGCCGTGGTGGATGACAATAATCATGGCAATTTGTTTTCGAAACTGAATCTCGCTAACGTCCACGCTGGCCTGCCATCACCGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCGCAACCTGGCACGGACCTTGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCCCGAATCGTGGGGGTACATCCTGCTTGNGCAACATTTCCGGCATNACTTGAGCACCCNGCTACTACGACGTTCTTCGCCTGGTTTGGCCAAGATCTCGCTCGAGCTGTTCCTCTGACAGTACCACATACTGGCTTGGCGGCGGACCGGACACGGCGGATGCTGGTGCTGCGTAGCCCGGNCTNTATACCCACGCTGAACGTGCTGATAAACGTACGTTCATANNNATCGTGTGCCGTATACCGCACGAGATTCATNCGCGNTTAACGAGCGTGCTGCTGCCGTACGCGGTACCGAACCGACTGGNAAGCTAGCGCTAAGGAATCATTCGTAGTACTATCGTGATACTAGTCATACCGTAAGAGGCCG]




>consensus_3719#0
GCCCGAGGTTTANATCACGAGTGGTGGTACCGCTGGAANCTGGACCGGTACACCATCACG
TACGTGGATGATCTTTGCGGCGATCTTTCAAATCTCCCAACGGTTCGCCGTGGTGGATGA
CAATAATCATGGCAATTTGTTTTCGAAACTGAATCTCGCTAACGTCCACGCTGGCCTGCC
ATCACCGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCGCAACCTGGCACGGACCT
TGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCCCGAATCGTGGGGGTACATCCTGCTT
GNGCAACATTTCCGGCATNACTTGAGCACCCNGCTACTACGACGTTCTTCGCCTGGTTTG
GCCAAGATCTCGCTCGAGCTGTTCCTCTGACAGTACCACATACTGGCTTGGCGGCGGACC
GGACACGGCGGATGCTGGTGCTGCGTAGCCCGGNCTNTATACCCACGCTGAACGTGCTGA
TAAACGTACGTTCATANNNATCGTGTGCCGTATACCGCACGAGATTCATNCGCGNTTAAC
GAGCGTGCTGCTGCCGTACGCGGTACCGAACCGACTGGNAAGCTAGCGCTAAGGAATCAT
TCGTAGTACTATCGTGATACTAGTCATACCGTAAGAGGCCG

consensusID : consensus_3719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 604
fasta sequence

                              [CGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCCGCAACCGGCAGGACTGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCCGATCGTGGGGTACATCCTGCTGCGCAACATTTCCGGCATCCTGCGCACCCGCTACTCG-ACGTTCTTCGCCTGGTTTGGCAAGATCTCGCTCGAGCTGTTCCTCTGCCAGTACCACATCTGGCTGGCGGCGGACCGGAACGGGGTGCTGGTGCTGCTGCCCGGCTTTCCCACGCTGAACGTGCTGATAACGTCGTTC-ATTTTCGTGTGCGTATCGCACGAGATTCATCGCGTTACGAGCGTGCTGCTGCCGTACGCGGTACCGAACGACTGGAAGCTAGCGCTAATGAATATTGTGTTCTTCGTGATACTGCTCATACCGTTGGGCCGGTATGACGGCATGTTTTGAGTGGAGT-GGTATTGGAATTGCGCAATCCCACTCCAACGTTCCCACACCGCACACCGCACACCAAATGAACTTACCCCGTAGTGTATAGCCGGTGGTTTATGAAGCTTATAATGGAAATAAAACCAAACGCTTGATTGAGATATGGTAACTGCTTTGTTAACGATAAAAAAA]

[+] EMBL BX616131             [CGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCCGCAACCGGCAGGACTGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCCGATCGTGGGGTACATCCTGCTGCGCAACATTTCCGGCATCCTGCGCACCCGCTACTCG ACGTTCTTCGCCTGGTTTGGCAAGATCTCGCTCGAGCTGTTCCTCTGCCAGTACCACATCTGGCTGGCGGCGGACCGGAACGGGGTGCTGGTGCTGCTGCCCGGCTTTCCCACGCTGAACGTGCTGATAACGTCGTTC ATTTTCGTGTGCGTATCGCACGAGATTCATCGCGTTACGAGCGTGCTGCTGCCGTACGCGGTACCGAACGACTGGAAGCTAGCGCTAATGAATATTGTGTTCTTCGTGATACTGCTCATACCGTTGGGCCGGTATGACGGCATGTTTTGAGTGGAGT GGTATTGGAATTGCGCAATCCCACTCCAACGTTCCCACA                                                                                                                             ]
[-] EMBL CNS08ZVI             [                                                                                                                                              TCGAACGTTTTTCGCCTGGTTTGGCAAGATCTCGCTCGAGCTGTTCCTCTGCCAGTACCACATCTGGCTGGCGGCGGACCGGAACGGGGTACTGGTGCTGCTGCCCGGCTTTCCCACGCTGAACGTGCTGATAACGTCGTTCAATTTTCGTGTGCGTATCGCACGAGATTCATCGCGTTACGAGCGTGCTGCTGCCGTACGCGGTACCGAACGACTGGAAG TAGCGCTAAGGAATATTGTGTTCTTCGTGATACTGCTCATACCGTTGGGCCGGTATGACGGCATGTTTTGAGTGGAGTGGGTA TGGAATTGCGCAATCCCACTCCAACGTTCCCACACCGCACACCGCACACCAAATGAACTTACCCCGTAGTGTATAGCCGGTGGTTTATGAAGCTTATAATGGAAATAAAACCAAACGCTTGATTGAGATATGGTAACTGCTTTGTTAACGATAAAAAAA]




>consensus_3719#1
CGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCCGCAACCGGCAGGACTGTGAGGA
GGTGCACTCGTACGTGGTGTTTATCCCGATCGTGGGGTACATCCTGCTGCGCAACATTTC
CGGCATCCTGCGCACCCGCTACTCGACGTTCTTCGCCTGGTTTGGCAAGATCTCGCTCGA
GCTGTTCCTCTGCCAGTACCACATCTGGCTGGCGGCGGACCGGAACGGGGTGCTGGTGCT
GCTGCCCGGCTTTCCCACGCTGAACGTGCTGATAACGTCGTTCATTTTCGTGTGCGTATC
GCACGAGATTCATCGCGTTACGAGCGTGCTGCTGCCGTACGCGGTACCGAACGACTGGAA
GCTAGCGCTAATGAATATTGTGTTCTTCGTGATACTGCTCATACCGTTGGGCCGGTATGA
CGGCATGTTTTGAGTGGAGTGGTATTGGAATTGCGCAATCCCACTCCAACGTTCCCACAC
CGCACACCGCACACCAAATGAACTTACCCCGTAGTGTATAGCCGGTGGTTTATGAAGCTT
ATAATGGAAATAAAACCAAACGCTTGATTGAGATATGGTAACTGCTTTGTTAACGATAAA
AAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3719#0      GCCCGAGGTTTANATCACGAGTGGTGGTACCGCTGGAANCTGGACCGGTACACCATCACG 60
consensus_3719#1      ------------------------------------------------------------
                                                                                  

consensus_3719#0      TACGTGGATGATCTTTGCGGCGATCTTTCAAATCTCCCAACGGTTCGCCGTGGTGGATGA 120
consensus_3719#1      ------------------------------------------------------------
                                                                                  

consensus_3719#0      CAATAATCATGGCAATTTGTTTTCGAAACTGAATCTCGCTAACGTCCACGCTGGCCTGCC 180
consensus_3719#1      ------------------------------------------------------------
                                                                                  

consensus_3719#0      ATCACCGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCGCAACCTGGCACGGACCT 240
consensus_3719#1      -----CGGCATCGGGTGCTACATGACGTGGACGTTCTTCTGCCGCAACCGGCA-GGAC-- 52
                           *************************************   * * **** ****  

consensus_3719#0      TGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCCCGAATCGTGGGGGTACATCCTGCTT 300
consensus_3719#1      TGTGAGGAGGTGCACTCGTACGTGGTGTTTATCCC--GATCGTGGGG-TACATCCTGCT- 108
                      ***********************************   ********* *********** 

consensus_3719#0      GNGCAACATTTCCGGCATNACTTGAGCACCCNGCTACTACGACGTTCTTCGCCTGGTTTG 360
consensus_3719#1      GCGCAACATTTCCGGCAT--CCTGCGCACCCG-CTACT-CGACGTTCTTCGCCTGGTTTG 164
                      * ****************  * ** ******  ***** *********************

consensus_3719#0      GCCAAGATCTCGCTCGAGCTGTTCCTCTGACAGTACCACATACTGGCTTGGCGGCGGACC 420
consensus_3719#1      GC-AAGATCTCGCTCGAGCTGTTCCTCTGCCAGTACCACAT-CTGGCT-GGCGGCGGACC 221
                      ** ************************** *********** ****** ***********

consensus_3719#0      GGACACGGCGGATGCTGGTGCTGCGTAGCCCGGNCTNTATACCCACGCTGAACGTGCTGA 480
consensus_3719#1      GGA-ACGG--GGTGCTGGTGCTGC--TGCCCGGCTTT----CCCACGCTGAACGTGCTGA 272
                      *** ****  * ************   ******  *     *******************

consensus_3719#0      TAAACGTACGTTCATANNNATCGTGTGCCGTATACCGCACGAGATTCATNCGCGNTTAAC 540
consensus_3719#1      TAA-CGT-CGTTCATTT---TCGTGTGC---GTATCGCACGAGATTCATC-GCGTT--AC 321
                      *** *** *******     ********    ** **************  *** *  **

consensus_3719#0      GAGCGTGCTGCTGCCGTACGCGGTACCGAACCGACTGGNAAGCTAGCGCTAAGGAATCAT 600
consensus_3719#1      GAGCGTGCTGCTGCCGTACGCGGTACCGAAC-GACTGGAA-GCTAGCGCTAATGAATATT 379
                      ******************************* ****** * *********** ****  *

consensus_3719#0      TCGTAGTACTATCGTGATACTAGTCATACCGTAAGAGGCCG------------------- 641
consensus_3719#1      GTGT----TCTTCGTGATACTGCTCATACCGTTGG--GCCGGTATGACGGCATGTTTTGA 433
                        **       **********  *********  *  ****                   

consensus_3719#0      ------------------------------------------------------------
consensus_3719#1      GTGGAGTGGTATTGGAATTGCGCAATCCCACTCCAACGTTCCCACACCGCACACCGCACA 493
                                                                                  

consensus_3719#0      ------------------------------------------------------------
consensus_3719#1      CCAAATGAACTTACCCCGTAGTGTATAGCCGGTGGTTTATGAAGCTTATAATGGAAATAA 553
                                                                                  

consensus_3719#0      ---------------------------------------------------
consensus_3719#1      AACCAAACGCTTGATTGAGATATGGTAACTGCTTTGTTAACGATAAAAAAA 604