cluster # 3750

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Anopheles gambiae
cluster # 3750 cluster # 3750 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3750#0 length = 660 sequences # 2

consensus_3750#1 length = 480 sequences # 1

consensusID : consensus_3750#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGACGAGGAGGTCGACCATGTCCTGCGCCAGTCCGAGATCGTGCTGGACGAGATTCAGTGTTACAAGGGCGCCGGTAAGGAAATTCGGGAAGCGATTGCAGACCCCTCCCCCGAATGCCAGGAGAAGGCGTGGAACATTGTGATACCGCTGGTGGAGAAGCTGAAGCGCTGCTACGAACACTCCCTCGAGCTGGAACGGATCGTGCCGAAGCTGCT-GGGACAGCTGGTGGGCGGCCGGCTCAACCCAACGCAGCACCTGGAAACGCAGCAGGCACTGGTGAAGCAGCTGGCCGAGATACTGGAGTTTGTGCTCAAATTTGACGAATACAAGATGAAAACGCCTGCGATACAGAACGATTTCAGCTACTACAGACGCATCGCCAGCCGGCAGCGGCTCGACCAGACGAACGAGATGATCATCAGTACCGAGCTGGCGAACCGGGATGTCGCTGTTCTATGCGCACGCGACCCCAATGCTGAAGGTGCTGAGCGAAGCGACGTCCAAGTTCGTGCAGGACAATTCCGACAACGTCGACAACACGACCGAAACGCTCGGCACGATGGCGAAAGTTTGCCCTCCGGATGCTCGAGAATCCCAAACTGTTGGCACAAATCGAGCGGGAAGAAACGCACCT]

[+] EMBL BM607226             [CCGCCCACGCGTCCGCCCACGCGTCCGACGAGGAGGTCGACCATGTCCTGCGCCAGTCCGAGATCGTGCTGGACGAGATTCAGTGTTACAAGGGCGCCGGTAAGGAAATTCGGGAAGCGATTGCAGACCCCTCCCCCGAATGCCAGGAGAAGGCGTGGAACATTGTGATACCGCTGGTGGAGAAGCTGAAGCGCTGCTACGAACACTCCCTCGAGCTGGAACGGATCGTGCCGAAGCTGCT GGGACAGCTGGTGGGCGGCCGGCTCAACCCAACGCAGCACCTGGAAACGCAGCAGGCACTGGTGAAGCAGCTGGCCGAGATACTGGAGTTTGTGCTCAAATTTGACGAATACAAGATGAAAACGCCTGCGATACAGAACGATTTCAGCTACTACAGACGCATCGCCAGCCGGCAGCGGCTCGACCAGACGAACGAGATGATCATCAGTACCGAGCTGGCGAACCGGGATGTCGCTGTTCTATGCGCACGCGACCCCAATGCTGAAGGTGCTGAGCGAAGCGACGTCCAAGTTCGTGCAGGACAATTCCGACAACGTCGACAACACGACCGAAACGCTCGGCACGATGGCGAAAGTTTGCCCTCCGGATGCTCGAGAATCCCAAACTGTTGGCACAAATCGAGCGGGAAGAAACGCACCT]
[+] EMBL BX623957             [                                                                               cgtccaacACAAGGGCGCCGGTAAGGAAATCCGGGAAGCGATTGCGGACCCCTCGCCCGAATGCCAGGAGAAGGCGTGGAACATTGTGATACCGCTGGTGGAGAAGCTGAAGCGCTGCTACGAACACTCCCTCGAGCTGGAACGGATCGTGCCGAAGCTGCTCGGGACAGCTGGTGGGCGGCCGGCTCAACCCAACGCAGCACCTGGAAACGCAGCAGGCACTGGTGAAGCAGCTGGCCGAGATACTGGAGTTTGTGCTCAAATTTGACGAATACAAGATGAAAACGCCTGCGATACAGAACGATTTCAGCTACTACAGACGCATCGCCAGCCGGCAGCGGCTCGACCAGACGAACGAGATGATCATCAGTACCGAGCTGGCGAACC GGATGTCACTGTTCTATGCGCACGCGACCCCAATGCTGAAGGTGCTGAGCGAAGCGACGTCCAAGTTCGTGCAGGACAATTCCGACAACGTCGACAACACGACCGAAACGC                                                                                   ]




>consensus_3750#0
CCGCCCACGCGTCCGCCCACGCGTCCGACGAGGAGGTCGACCATGTCCTGCGCCAGTCCG
AGATCGTGCTGGACGAGATTCAGTGTTACAAGGGCGCCGGTAAGGAAATTCGGGAAGCGA
TTGCAGACCCCTCCCCCGAATGCCAGGAGAAGGCGTGGAACATTGTGATACCGCTGGTGG
AGAAGCTGAAGCGCTGCTACGAACACTCCCTCGAGCTGGAACGGATCGTGCCGAAGCTGC
TGGGACAGCTGGTGGGCGGCCGGCTCAACCCAACGCAGCACCTGGAAACGCAGCAGGCAC
TGGTGAAGCAGCTGGCCGAGATACTGGAGTTTGTGCTCAAATTTGACGAATACAAGATGA
AAACGCCTGCGATACAGAACGATTTCAGCTACTACAGACGCATCGCCAGCCGGCAGCGGC
TCGACCAGACGAACGAGATGATCATCAGTACCGAGCTGGCGAACCGGGATGTCGCTGTTC
TATGCGCACGCGACCCCAATGCTGAAGGTGCTGAGCGAAGCGACGTCCAAGTTCGTGCAG
GACAATTCCGACAACGTCGACAACACGACCGAAACGCTCGGCACGATGGCGAAAGTTTGC
CCTCCGGATGCTCGAGAATCCCAAACTGTTGGCACAAATCGAGCGGGAAGAAACGCACCT

consensusID : consensus_3750#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [CCGTGTGTGTCCGTGCATGCACGCGAAAGCTGAAAGAGCTCGGTCCCTGCTACCAGTGATTAATTCGATAAAGTAGTTACAAAATAGTGTAGTGAATCATAAAACAGACACCCAACAGTGAGAGTGAGAATTCGTACGAAAGTGAATAAACGGCATTAGTGTGCCCCCGCGTGCGTGTGTGTGTGTTTGTGCTCGATTGTGATTAGTTTCTGCTGTTGGAGAGCAAATTAAGAAAAAAAAAGCGTCAGGTGTGTAGTAATTGCTCCGATCGTCGCATCGAAAACAGAAGAGAAAAAGCACAGACACACAACCAGTGAGTCATGGGGAAGTTACTGAGCCTGCTGGCACGGGATGAATCAACCTGCTGCACACCGAAAACGTACGACGTGTTTCTCGACTTTGAAAATGCGGCCCCGACCGACCTGGAGCGGGAGGTGTACGAGGAGGTCGACCATGTCCTGCGCCAGTCCGAGATCGTGC]

[+] EMBL BM630218             [CCGTGTGTGTCCGTGCATGCACGCGAAAGCTGAAAGAGCTCGGTCCCTGCTACCAGTGATTAATTCGATAAAGTAGTTACAAAATAGTGTAGTGAATCATAAAACAGACACCCAACAGTGAGAGTGAGAATTCGTACGAAAGTGAATAAACGGCATTAGTGTGCCCCCGCGTGCGTGTGTGTGTGTTTGTGCTCGATTGTGATTAGTTTCTGCTGTTGGAGAGCAAATTAAGAAAAAAAAAGCGTCAGGTGTGTAGTAATTGCTCCGATCGTCGCATCGAAAACAGAAGAGAAAAAGCACAGACACACAACCAGTGAGTCATGGGGAAGTTACTGAGCCTGCTGGCACGGGATGAATCAACCTGCTGCACACCGAAAACGTACGACGTGTTTCTCGACTTTGAAAATGCGGCCCCGACCGACCTGGAGCGGGAGGTGTACGAGGAGGTCGACCATGTCCTGCGCCAGTCCGAGATCGTGC]




>consensus_3750#1
CCGTGTGTGTCCGTGCATGCACGCGAAAGCTGAAAGAGCTCGGTCCCTGCTACCAGTGAT
TAATTCGATAAAGTAGTTACAAAATAGTGTAGTGAATCATAAAACAGACACCCAACAGTG
AGAGTGAGAATTCGTACGAAAGTGAATAAACGGCATTAGTGTGCCCCCGCGTGCGTGTGT
GTGTGTTTGTGCTCGATTGTGATTAGTTTCTGCTGTTGGAGAGCAAATTAAGAAAAAAAA
AGCGTCAGGTGTGTAGTAATTGCTCCGATCGTCGCATCGAAAACAGAAGAGAAAAAGCAC
AGACACACAACCAGTGAGTCATGGGGAAGTTACTGAGCCTGCTGGCACGGGATGAATCAA
CCTGCTGCACACCGAAAACGTACGACGTGTTTCTCGACTTTGAAAATGCGGCCCCGACCG
ACCTGGAGCGGGAGGTGTACGAGGAGGTCGACCATGTCCTGCGCCAGTCCGAGATCGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3750#0      CCGCCCACGCGTCCGCCCACGCGTCCGACGAGGAGGTCGACCATGTCCTGCGCCAGTCCG 60
consensus_3750#1      ------------------------------------CCGTGTGTGTCC-GTGCATGCACG 23
                                                           **    ***** * **  *  **

consensus_3750#0      AGATCGTGCTGGACGAGATTCAGTGTTACAAGGGCGCCGGTAAGGAAATTCGGGAAGCGA 120
consensus_3750#1      CGA--AAGCTGAAAGAGCTCGGTCCCTGCTA-----CCAGTGATTAATTCGATAAAGTAG 76
                       **    **** * *** *       * * *     ** ** *  ** *     ***   

consensus_3750#0      TTGCAGACCCCTCCCCCGAATGCCAGGAGAAGGCGTGGAACATTGTGAT--ACCGCTGGT 178
consensus_3750#1      TTACAAAATAGTGTAGTGAAT-CATAAAACAGACACCCAACAGTGAGAGTGAGAATTCGT 135
                      ** ** *    *     **** *    *  ** *    **** ** **   *    * **

consensus_3750#0      GGAGAAGCTGAAGCGCTGCTACGAACACTCCCTCGAGCTGGAACGGATCGTGCCGAAGCT 238
consensus_3750#1      ACGAAAG-TGAATAAACGGCATTAGTGTGCCCCCGCGTGCGTGTGTGT-GTGTTTGTGCT 193
                          *** ****     *  *  *     *** ** *   *   *  * ***     ***

consensus_3750#0      GCTGGGACAGCTGGTGGGCGGCCGGCTCAACCCAACGCAGCACCTGGAAACGCAGCAGGC 298
consensus_3750#1      -CGATTGTGATTAGTTT-CTGCTGTTGGAGAGCAAATTAAGAAAAAAAAA-GCGTCAGGT 250
                       *         * **   * ** *    *   ***   *  *     *** **  **** 

consensus_3750#0      AC-TGGTGAAGCAGCTGGCCGAGATACTGGAGTTTGTGCTCAAATTTGACGAATACAAGA 357
consensus_3750#1      GTGTAGTAATTGCTCCGATCGTCGCATCGAAAACAGAAGAGAAAAAGCACAGACACACAA 310
                         * ** *     * *  **    *  * *    *     ***    **  * ***  *

consensus_3750#0      TGAAAACGCCTGCGATACAGAACGATTTCAGCTACTACAGACGCATCGCCAGCCGGCAGC 417
consensus_3750#1      CCAGTGAGTCATGGGGAAGTTACTGAGCCTGCTGGCACGGGATGA--ATCAACCTGCTGC 368
                        *    * *   *  *    **     * ***   ** *    *    ** ** ** **

consensus_3750#0      GGCTCGACCAGACGAACGAGATGATCATCAGTACCGAGCTGGCGAACCGGGATGTCGCTG 477
consensus_3750#1      ACACCGA--AAACGTACGACGTGTTTCTCGACTTTGAAAATGCGGCCCCGACCGACCTGG 426
                          ***  * *** ****  ** *  **      **    ***  ** *   * *   *

consensus_3750#0      TTCTATGCGCACGCGACCCCAATGCTGAAGGTGCTGAGCGAAGCGACGTCCAAGTTCGTG 537
consensus_3750#1      AGCGGGAGGTGTACGAG---GAGGTCGACCATGTCCTGCGCCA----GTCCGAGATCGTG 479
                        *     *    ***     * *  **   **    ***       **** ** *****

consensus_3750#0      CAGGACAATTCCGACAACGTCGACAACACGACCGAAACGCTCGGCACGATGGCGAAAGTT 597
consensus_3750#1      C----------------------------------------------------------- 480
                      *                                                           

consensus_3750#0      TGCCCTCCGGATGCTCGAGAATCCCAAACTGTTGGCACAAATCGAGCGGGAAGAAACGCA 657
consensus_3750#1      ------------------------------------------------------------
                                                                                  

consensus_3750#0      CCT 660
consensus_3750#1      ---