cluster # 3753

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Anopheles gambiae
cluster # 3753 cluster # 3753 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3753#0 length = 818 sequences # 2

consensus_3753#1 length = 644 sequences # 1

consensusID : consensus_3753#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 818
fasta sequence

                              [CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCTGTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGCGCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGG-CGCCAGGCGAGNGGGAGGTAATCGG-TAACGCCAA-ACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGG-AACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTT-CAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTTCGCTGAACGAACTGAACGGCGCGCGCAATGGAACCGTTTTCGGTGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGTANGGGCTGCGATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG]

[+] EMBL AL693333             [CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCTGTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGCGCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGG CGCCAGGCGAGNGGGAGGTAATCGG TAACGCCAA ACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGG AACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTT CAGACGCAGTAC                                                                                                                                                                                        ]
[+] EMBL BX622771             [                                                          gcGTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGCGCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGG GTGTCGTTTAAAAGTGGCCGCCAGGCG GAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGA TCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCT GC AGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTTCGCTGAACGAACTGAACGGCGCGCGCAATGGAACCGTTTTCGGTGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGTANGGGCTGCGATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG]




>consensus_3753#0
CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCT
GTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGC
GCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCC
CGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGGCGCCAGGCGAGNGGGAGGTAATCGGT
AACGCCAAACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTG
TACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGA
GTTTATCCACTGGGCTGTGGGGAATATCCCCGGAACGATATCGATCGGGGTGAAACGCTC
GTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTG
GTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGT
GCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTG
GCGTGTACGCGGGCAACTTCTTCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGC
ACAGCTACGCGAATGTTCGCTGAACGAACTGAACGGCGCGCGCAATGGAACCGTTTTCGG
TGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGTANGGGCTGC
GATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG

consensusID : consensus_3753#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [GTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGGTGTCGTTTAAAAGTGGCCGCCAGGCGGAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGATCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGCAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTTGACTGGCTGGTGCAGTGAGTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGTCCCCATCTANGTTCGCTGAACGAACTGAACGGCGCGCGCAATGG]

[+] EMBL BX627089             [GTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGGTGTCGTTTAAAAGTGGCCGCCAGGCGGAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGATCCGGACGTACCGTCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGCAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTTGACTGGCTGGTGCAGTGAGTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGTCCCCATCTANGTTCGCTGAACGAACTGAACGGCGCGCGCAATGG]




>consensus_3753#1
GTGCCGGATGTGATCGACGAAGCGCCCGACTGTTGGGCCCGGGTGTCGTTTAAAAGTGGC
CGCCAGGCGGAGGGAGGTAATCGGCTAACGCCAACACAAATACGGAACCCTCCGGTTGTG
AGCTGGAACGCGAACGAGCGTGCGTTGTACACGCTGATCCTGACCGATCCGGACGTACCG
TCACGGGATGATCCACGCTATCGGGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGC
AACGATATCGATCGGGGTGAAACGCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGC
ACAGGGTTGCATCGGTTCGTGCTGCTGGTGTTTGAGCATCTGCAGAAGCTGGACTTTTCG
GCGGAACCGAGGATCACGGCACAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAAC
TTTACGCGCAAGTACGATTTGAGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTAC
GACGATTACGTGAACACGCTGCAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTT
GACTGGCTGGTGCAGTGAGTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGT
CCCCATCTANGTTCGCTGAACGAACTGAACGGCGCGCGCAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3753#0      CCCGAGGTTACCACAGTGTGTTCCCCGGCAGTATGTCCACGTGCTGTGCGCGGTGTAGCT 60
consensus_3753#1      ------------------------------------------------------------
                                                                                  

consensus_3753#0      GTTGTTGGTGGTTAGTTTGCTGCTGCTAGAATCTCGCGCCTCCGACATACTGAACGATGC 120
consensus_3753#1      ------------------------------------------------------------
                                                                                  

consensus_3753#0      GCACGTGTACCGTGCCTTCGCGTCGTACGAGGTCGTGCCGGATGTGATCGACGAAGCGCC 180
consensus_3753#1      ----------------------------------GTGCCGGATGTGATCGACGAAGCGCC 26
                                                        **************************

consensus_3753#0      CGACTGTTGGGCCCGGAGTGTCGTTTAAAAGTGGC-GCCAGGCGAGNGGGAGGTAATCGG 239
consensus_3753#1      CGACTGTTGGGCCCGG-GTGTCGTTTAAAAGTGGCCGCCAGGCG-GAGGGAGGTAATCGG 84
                      **************** ****************** ******** * *************

consensus_3753#0      -TAACGCCAA-ACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCG 297
consensus_3753#1      CTAACGCCAACACAAATACGGAACCCTCCGGTTGTGAGCTGGAACGCGAACGAGCGTGCG 144
                       ********* *************************************************

consensus_3753#0      TTGTACACGCTGATCCTGACCGAGTCCGGACGTACCGTCACGGGATGATCCACGCTATCG 357
consensus_3753#1      TTGTACACGCTGATCCTGACCGA-TCCGGACGTACCGTCACGGGATGATCCACGCTATCG 203
                      *********************** ************************************

consensus_3753#0      GGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGG-AACGATATCGATCGGGGTGAAAC 416
consensus_3753#1      GGAGTTTATCCACTGGGCTGTGGGGAATATCCCCGGCAACGATATCGATCGGGGTGAAAC 263
                      ************************************ ***********************

consensus_3753#0      GCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCT 476
consensus_3753#1      GCTCGTGGAGTATCTGGGAGCGGTGACGCCACGGGGCACAGGGTTGCATCGGTTCGTGCT 323
                      ************************************************************

consensus_3753#0      GCTGGTGTTTGAGCATCTGGCAAGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCA 536
consensus_3753#1      GCTGGTGTTTGAGCATCTGC--AGAAGCTGGACTTTTCGGCGGAACCGAGGATCACGGCA 381
                      *******************   **************************************

consensus_3753#0      CAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTG 596
consensus_3753#1      CAGTGCGGTACGGTGCGGCGATACTTCTCCACGCGCAACTTTACGCGCAAGTACGATTTG 441
                      ************************************************************

consensus_3753#0      AGTGGCGTGTACGCGGGCAACTTCTTC-AGACGCAGTACGACGATTACGTGAACACGCTG 655
consensus_3753#1      AGTGGCGTGTACGCGGGCAACTTCTTCCAGACGCAGTACGACGATTACGTGAACACGCTG 501
                      *************************** ********************************

consensus_3753#0      CAGGCACAGCTACGCGAATGTTCGC-TGAACGAA---CTGAACGGCGCGCGCAATGGAAC 711
consensus_3753#1      CAGGCACAGCTACGCGAATGTGAGAGCGAGCGTGAGTTTGACTGGCTGGTGCAGTGA--- 558
                      *********************  *   ** **      ***  ***  * *** **    

consensus_3753#0      CGTTTTCGGTGGGCCGTAAGTGGAAGAANGGCTAGCCCGGTGCTGCCACTGTTGTTTGGT 771
consensus_3753#1      -GTTTGATGCTAGAATTTGTTTTGCTCTTTCTTTTCCCGGTGTCCCCATCTANGTTCGCT 617
                       ****   *   *   *   *           *  *******   ***     *** * *

consensus_3753#0      --ANGGGCTGCGATGTGTGTGAATGTGGGGAAAGGGGTCTTCATTTATG 818
consensus_3753#1      GAACGAACTGAACGGCGCGCGCA-ATGG--------------------- 644
                        * *  ***    * * * * *  ***