cluster # 3765

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Anopheles gambiae
cluster # 3765 cluster # 3765 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3765#0 length = 701 sequences # 2

consensus_3765#1 length = 269 sequences # 1

consensusID : consensus_3765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 701
fasta sequence

                              [CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGACGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAAACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCTGGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTACACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTTCCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGGTGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTACTTGCCTCTCTCACAGTGCAGTATTTCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC]

[+] EMBL BM644076             [CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGACGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAAACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCTGGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTACACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTTCCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGGTGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTAC                                                                 ]
[+] EMBL BM606626             [     ccgGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGAT  AAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGACGACGAGCTGCGGAAGCTGTCCGGGGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAAACGCAACGGGCATCAGGCGAATGGCGAGCGGTCGTCGACATTCCACATTCCTCGCAGCCTGGATATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTACACCGAGTACCAGTGGCTAGTCGATTTTAGCTTATACTCCGCCATCGTGTACACT GTTTCCGAGGTTTATCATTTCTTCTATCCACT GAAGGAAGAAGTCAATTTGAGCATGCTCTGGTGCC TTCT GGTCGTGTTTTTCGCATTCAAACTGCTTGCCTCTCTCACAGTGCAGTATTTCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC]




>consensus_3765#0
CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCG
TAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAA
ACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGG
CGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTT
TTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGA
CGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAA
ACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCT
GGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTA
CACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTT
CCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGG
TGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTACTTGCCTCTCTCACAGTGCAGTATT
TCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC

consensusID : consensus_3765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGA]

[+] EMBL BM612541             [CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATAAGCGATAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGA]




>consensus_3765#1
CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCGTAGCCGGCGCTTGCAGATATCCGTC
CCACCGCCAGCCATTCGTAATGCCGATGAGCACAAACCATTAACGCACATTCGTAGGATA
AGCGATAAAACACCACAGAATGGCACTGCTTGGCGCACAACTGGTCATCACGCTGATCAT
GGTCAGCGTGATTCAAAAGCTGAGTCCACACTTTTCGCTCGCAAAGTGGATCCTTTGCTC
CACCGGGCTAACGCGCTACCTGCATCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3765#0      CCGGTGAAGGAACCTATAAACTGACCAACTTGCGTGAAATCGTGTATGAAAACGTGCTCG 60
consensus_3765#1      -------------------------CCGCCCACGCGTCCGCGTGTATGAAAACGTGCTCG 35
                                               *  *   ** *    ********************

consensus_3765#0      TAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAA 120
consensus_3765#1      TAGCCGGCGCTTGCAGATATCCGTCCCACCGCCAGCCATTCGTAATGCCGATGAGCACAA 95
                      ************************************************************

consensus_3765#0      ACCATTAACGCACATTCGTAGGATAAGCGATAAAAAACACCACAGAATGGCACTGCTTGG 180
consensus_3765#1      ACCATTAACGCACATTCGTAGGATAAGCGATAAAA--CACCACAGAATGGCACTGCTTGG 153
                      ***********************************  ***********************

consensus_3765#0      CGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTT 240
consensus_3765#1      CGCACAACTGGTCATCACGCTGATCATGGTCAGCGTGATTCAAAAGCTGAGTCCACACTT 213
                      ************************************************************

consensus_3765#0      TTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGACGGA 300
consensus_3765#1      TTCGCTCGCAAAGTGGATCCTTTGCTCCACCGGGCTAACGCGCTACCTGCATCCGA---- 269
                      ********************************************************    

consensus_3765#0      CGACGAGCTGCGGAAGCTGTCCGGAGTGCCGCGGGAAAAGGGCAAGGGGAAAAAGGACAA 360
consensus_3765#1      ------------------------------------------------------------
                                                                                  

consensus_3765#0      ACGCAACGGGCATCAGGCGAATGGCGAGCGATCGTCGACATTCCACATTCCTCGCAGCCT 420
consensus_3765#1      ------------------------------------------------------------
                                                                                  

consensus_3765#0      GGACATACGGCTGGACACGCTTCCCATCTCGCCGTACGATATTGTGCATTTACGCTTCTA 480
consensus_3765#1      ------------------------------------------------------------
                                                                                  

consensus_3765#0      CACCGAATACCAGTGGCTAGTCGATTTTAGCTTGTACTCCGCCATCGTGTACACTGGTTT 540
consensus_3765#1      ------------------------------------------------------------
                                                                                  

consensus_3765#0      CCGAGGTTTATCATTTTTTCTATCCACTGGAAGGAAGAAGTCAATTTGAGCATGCTCTGG 600
consensus_3765#1      ------------------------------------------------------------
                                                                                  

consensus_3765#0      TGCCTTTCTGGGTTGTGTTTTTCGCATTTAAACTACTTGCCTCTCTCACAGTGCAGTATT 660
consensus_3765#1      ------------------------------------------------------------
                                                                                  

consensus_3765#0      TCAAGAGCGAGGAATCTATTGGTGAACGATCCACCTGTATC 701
consensus_3765#1      -----------------------------------------