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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGAGTCTTCGCACTACCAAAAGATCG]
[+] EMBL BM638713 [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGAGTCTTCGCACTACCAAAAGATCG]
consensusID : consensus_3768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA]
[+] EMBL BM655706 [CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA]
consensusID : consensus_3768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTAGTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC]
[+] EMBL BM606379 [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTAGTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3768#0 CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGT-- 58
consensus_3768#1 --------CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC 52
consensus_3768#2 CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC 60
************************************************
consensus_3768#0 ----------------------------------------------GAATCATTATTGCG 72
consensus_3768#1 CGCGGGTTCGACGACTGGCCAATCCGCAGAGGT-------------GAATCATTATTGCG 99
consensus_3768#2 CGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCG 120
**************
consensus_3768#0 GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTA 132
consensus_3768#1 GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTA 159
consensus_3768#2 GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTA 180
************************************* **********************
consensus_3768#0 GTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTG 192
consensus_3768#1 GTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTG 219
consensus_3768#2 GTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTG 240
******** **************************** **********************
consensus_3768#0 AAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAG 252
consensus_3768#1 AAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAG 279
consensus_3768#2 AAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAG 300
****************************** *****************************
consensus_3768#0 CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 312
consensus_3768#1 CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 339
consensus_3768#2 CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 360
************************************************************
consensus_3768#0 TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 372
consensus_3768#1 TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 399
consensus_3768#2 TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 420
************************************************************
consensus_3768#0 CAGTAGTAGCAGCA---ACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 429
consensus_3768#1 CAGTAGTAGCAGCA---ACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 456
consensus_3768#2 CAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 480
*** ** ** **** *******************************************
consensus_3768#0 TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 489
consensus_3768#1 TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 516
consensus_3768#2 TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 540
************************************************************
consensus_3768#0 TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGG-AAGGA 548
consensus_3768#1 TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGG-AAGGA 575
consensus_3768#2 TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGA 600
************************************************* **** *****
consensus_3768#0 CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATG 608
consensus_3768#1 CGATGGA---CGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATG 632
consensus_3768#2 CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC------------------- 641
******* *******************************
consensus_3768#0 GATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGA 668
consensus_3768#1 GATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA----------------------- 669
consensus_3768#2 ------------------------------------------------------------
consensus_3768#0 GTCTTCGCACTACCAAAAGATCG 691
consensus_3768#1 -----------------------
consensus_3768#2 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||