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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 983 fasta sequence
[CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATANCGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTAACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTCCGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNAATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTANTATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGAAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTCACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCGTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGTATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANNTGGCGTGTGTNGATTAAGTGTGC]
[+] EMBL AL693967 [CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATANCGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTAACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTCCGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNAATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTANTATNGTAGCTAATAGACACTACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGTACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAGAAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGTCACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGCGTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAGTATGGAGAACGGGAACNATCAAGACTACTGGCGAACANCCAGCTTGGATTTGTCANCGGCCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNATAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCACCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAANNTGGCGTGTGTNGATTAAGTGTGC]
consensusID : consensus_3788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 731 fasta sequence
[CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACACAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGATGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTA-ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGG-CTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT]
[+] EMBL BX622462 [CGACATAACCCATAACGTTAAAGCAAATCCCTTTCGGGGATGAAAAACAAACATAAAACACAAAAGCAGGATAAAGTAGCTGAAAACAAAACTTGTATCCTTTTTTGGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAAAAAAAAAAAAGAACATAAATCAATCCCGCAATAAGATGTAGTGTAGAGGATGAAGACACGAAATCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTA ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGCGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGG CTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTGTCTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT]
[+] EMBL BX622881 [ TCGTATCGAACTGTGCTATTGGACACGGACCTGCTCACANTGCATGCATTTTTGTTCCGTTTCGGAGAAATTCAACGTGTAACGTTAACGTAGACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACGAAAGNGCATCCCACAGCGAGTCGCGGATGTTTTACCGTTCAGAGGGAGAGAAATACACGGTCTCACGATATACTTTACTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACGATCGAGGATGTGTGTCCCTCTTTTGCCAAAAGCACACNTGTGTAAGTGTGTGTGTGTGTTTATGCAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTGAACAACAAAATTTGCGAAAAGACACTACCGAAACGACATGAGATACTGACNACGACATAACGACAGGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3788#0 CATCCCCCGAGGTTAAAAAGCACACGTGTNTAAGTGTCGTGTGTGTGTATATGCAAAAGC 60
consensus_3788#1 ------------------------------------------------------------
consensus_3788#0 GTGCTGCATCACATCCCGAGTGTTTCAGTGTGTGTGTGTGTGTGGGCGCACGACAGTGTG 120
consensus_3788#1 ------------------------------------------------------------
consensus_3788#0 AACAACAAAATATGCGAAAAGACACTACCGAAACGACATGAGATACTGACGACGACATAN 180
consensus_3788#1 ----------------------------------------------------CGACATAA 8
*******
consensus_3788#0 CGACAGGCCACAAGTATATCAGAGGTAGCGCCAGCTGCTTCAGCCTAAGCAGCTAGTCTA 240
consensus_3788#1 C------CCATA---ACGTTAAAGCAAATCCCTTTCG----GGGATGAAAAACAAACATA 55
* *** * * * * ** * ** * * * * * * * **
consensus_3788#0 ACTGTTGTGTGCGAAGCCTGGTATAGAAGTTTAGTAATTNTNATAAAAGGGTTTCGTTTC 300
consensus_3788#1 AAACACA-----AAAGCAGGATAAAGTAGCTGAAAA----CAAAACTTGTATCCTTTTTT 106
* **** * ** ** ** * * * * * * * ***
consensus_3788#0 CGTNATAACCTTACCGCTGTTGTNGTAGTTGTAGCCCTTTATCGATATAGTAATAGTNNA 360
consensus_3788#1 GGTAAAAAAGAGAGAAAAATTGTGAAACTTAGAAGCAA-----AAAAAAAAAAGAACATA 161
** * ** * **** * ** * * * * * ** * *
consensus_3788#0 ATTAAAANANAGCATAATTGTTATACTAGTGTATATGNNATANCTGTNGTTACATAGTAN 420
consensus_3788#1 AATCAATCCCGCAATAA--GATGTAGTGTAGAGGATGAAG-ACACGAAATCGTATCGAAC 218
* * ** **** * * ** * * *** * * * ** * *
consensus_3788#0 TATNGTAGCTAATAGACAC-TACCGCTAAGNCGTAAGGCCCTATACTACTATANNCTTGT 479
consensus_3788#1 TGTGCTATTGGACACGGACCTGCTCACAATGCATGCATTTTTGTTCCGTTTCGGAGAAAT 278
* * ** * * ** * * ** * * * * * * *
consensus_3788#0 ACTNCTAGTAATCCTAGTNNATATATTATNTNCAAGGACTNTATATNNAAATAGGCCAAG 539
consensus_3788#1 TCAACGTGTAACGTTAACGTA-ACACAACGTAACGTTGTCGTACCACAAGAAGAAGCACG 337
* * **** ** * * * * * ** * * ** *
consensus_3788#0 AAAACTTACTNTACATAAGACCCTTGGATGNGANAGAANAACGATGANAAAGTNGGAAGT 599
consensus_3788#1 AAAGCGCATCCCACA-GCGAGTCGCGGATGTTTTACCGTTCAGA-GGGAGAGAAATACAC 395
*** * * *** ** * ***** * ** * * ** *
consensus_3788#0 CACCAGAGAAGTACTNTGTCTCGAGTCAGGGCGAGNGGANAGTAGGTAGANCGCAAGGGC 659
consensus_3788#1 GGCTCACGATATACTTTA-CTCGGTTCCACTGGGTTCCATCGCACGTGTCGCACCGCACG 454
* ** **** * **** ** * * * * ** * *
consensus_3788#0 GTCGTTACCCCTTGGTTGTACCCCTTGGGTTANAAGAGAACCAAAGGTGGCGCCCGGAAG 719
consensus_3788#1 ATCGAGGA----TGTGTGTCCCTCTTTTGCCAAAAGCACACGTGTGTAAGTGTGTGTGTG 510
*** ** *** ** *** * * *** ** * * * * *
consensus_3788#0 TATGGAGAACGGGAACNATCAAGACTAC-TGGCGAACANCCAGCTTGGATTTGTCANCGG 778
consensus_3788#1 TGTTTATG-CAAAAGCGTGCTGCATCACATCCCGAGTGTTTAGTGTGTGTGTGTGTGTGG 569
* * * * * * * * ** * *** ** ** * *** **
consensus_3788#0 CCACACCGANAGTCANAAGCCCAACGACTTGGNANNTTGGTATGTTTAAAGGAAACNGNA 838
consensus_3788#1 GCGCAC-GACAGTGTGAACAACAA-AATTTGCGAAAAGACACTACCGAAACGACATGAGA 627
* *** ** *** ** *** * *** * * *** ** * *
consensus_3788#0 TAGGTTGGTACAANGTAATGNGGTATTCNNNTCGTGGCGCANNTTGGCANTTTATTGGCA 898
consensus_3788#1 TAC-TGACGACGACATAACGACAGGCCACAAGTTTCAGAGGTAGCGCCAGCTGCTT--CA 684
** * ** * *** * * * ** * ** **
consensus_3788#0 CCTTTNNACANATATCGCCATCACGATGTCGGACTTAAGCAGGGNGCGGTTTCANGTTAA 958
consensus_3788#1 GCCT-AAGCAGCTGT--CTACTGTTGTGTGCAACCTGTTAGAAGTTTAGT---------- 731
* * ** * * * * *** ** * * **
consensus_3788#0 NNTGGCGTGTGTNGATTAAGTGTGC 983
consensus_3788#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||