cluster # 3789

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Anopheles gambiae
cluster # 3789 cluster # 3789 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3789#0 length = 675 sequences # 1

consensus_3789#1 length = 607 sequences # 2

consensusID : consensus_3789#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTATTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAAAGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGGGGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCGTAGTCTAATCGCAAA]

[+] EMBL BX628794             [TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTATTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAAAGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGGGGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCGTAGTCTAATCGCAAA]




>consensus_3789#0
TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTA
TTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAA
AGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGG
GGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAG
CCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATC
ATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTG
ATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAG
AAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAA
CCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTAC
ACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTG
CAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCG
TAGTCTAATCGCAAA

consensusID : consensus_3789#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 607
fasta sequence

                              [CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAATACCTCGACGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATAATCGCATCGACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATACATTCACAGTAGCTTC]

[+] EMBL BM605418             [CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAATACCTCGACGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATAATCGCATCGACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATACATTCACAGTAGCTTC]
[+] EMBL BM608973             [CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGC                                                                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_3789#1
CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACC
ACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATA
TACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGG
TAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAAT
TGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAA
TCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACC
AGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCG
CCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAATACCTCGA
CGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATAATCGCATC
GACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATACATTCACAG
TAGCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3789#0      TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTA 60
consensus_3789#1      ------------------------------------------------------------
                                                                                  

consensus_3789#0      TTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAA 120
consensus_3789#1      ------------------------------------------------------------
                                                                                  

consensus_3789#0      AGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGG 180
consensus_3789#1      ------------------------------------------------------------
                                                                                  

consensus_3789#0      GGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAG 240
consensus_3789#1      --------CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAG 52
                                 *************************************************

consensus_3789#0      CCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATC 300
consensus_3789#1      CCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATC 112
                      ******************** ***************************************

consensus_3789#0      ATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTG 360
consensus_3789#1      ATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTG 172
                      ********** *************************************************

consensus_3789#0      ATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAG 420
consensus_3789#1      ATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAG 232
                      ************************************************************

consensus_3789#0      AAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAA 480
consensus_3789#1      AAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAA 292
                      ************************************************************

consensus_3789#0      CCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTAC 540
consensus_3789#1      CCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTAC 352
                      ************************************************************

consensus_3789#0      ACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTG 600
consensus_3789#1      ACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTG 412
                      ************************************************************

consensus_3789#0      CAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCG 660
consensus_3789#1      CAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAA 472
                      ****************************************  *  ***  *   *  *  

consensus_3789#0      TAGTCTAATCGCAAA--------------------------------------------- 675
consensus_3789#1      TACCTCGACGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATA 532
                      **     *     *                                              

consensus_3789#0      ------------------------------------------------------------
consensus_3789#1      ATCGCATCGACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATAC 592
                                                                                  

consensus_3789#0      ---------------
consensus_3789#1      ATTCACAGTAGCTTC 607