|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence
[CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTGAACGTANAC]
[+] EMBL AL694017 [CAAGAATCCCCCGAGGTTTGCACGCAGAATAGCACACATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGAACACACTTCCCGATCGAAGACACTGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCGTATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGGAGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTACGTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTCCTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTGAACGTANAC]
consensusID : consensus_3791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCCGCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTGCACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCCTCTCTATCCAACC]
[+] EMBL BX612810 [GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCCGCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTGCACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATCTGCTCCCTTGTCGTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGGTGCAGACTGTTTTGCGCCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTGTTCGGCCAGGCGCATTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGTGATTCTACACATTCGCTTCTCTCCTTACCGTCGATGCCTCTCTATCCAACC]
[+] EMBL BX614517 [ TAATTATAACGGTAATTAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGGCTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGAGATGAGATGTGAACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCAACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATACTGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGCTCAAACATGGACCCGTTGGGAGGCTGTCGAAATTATCAATTGCTATCCGTGCTGGCTCAGCGCATC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3791#0 ------------------------------------------------------------
consensus_3791#1 GCGGACGGACCGAGCAGCGATGATAAGGACCGACGATACAGAAGCAGCGCATCTGTATCC 60
consensus_3791#0 ---------------------------------------CAAGAATCCCCCGAGGTT-TG 20
consensus_3791#1 GCTCCGTCTACGCTCCTAAGAAAGCTGGGTTCCGCAACGCCGGTGTTCAGCATCGTCCTG 120
* * * * * ** **
consensus_3791#0 CACGCAGAATAGCACAC-ATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT 79
consensus_3791#1 CACGCAGAATAGCACACCATTGACCCTTCGAAGAGGCGACGGGCTAATTATAACGGTAAT 180
***************** ******************************************
consensus_3791#0 TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG 139
consensus_3791#1 TAATTCCACTGTTCATCAGGCCTCTCGCAATGACGCAGTGCTCTTCCGATTCGGGAACGG 240
************************************************************
consensus_3791#0 CTTCAATATCGACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGACGATGAGATGTGA 199
consensus_3791#1 CTTCAATATCCACGGGGCTTCGCACGTTCCTATTTGGCACGCATTGA-GATGAGATGTGA 299
********** ************************************ ************
consensus_3791#0 ACACACTTCCCGATCGAAGACAC-----TGCACATGAATGCACAAAATACGCTCAATTCA 254
consensus_3791#1 ACACACTTCCCGATCGAAGACACATGAATGCACATGAATGCACAAAATACGCTCAATTCA 359
*********************** ********************************
consensus_3791#0 ACGTGGGAAGTTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATAC 314
consensus_3791#1 ACGTGGGTAATTCGGTCTCACGTACTTCTGCTTTAACCACTCGAAGACGACTGTAAATAC 419
******* * **************************************************
consensus_3791#0 TGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGGGCATCTCAGTAGACCAAACTCCG 374
consensus_3791#1 TGTTCCATGGCTCCTGGGTACTGGCACATCTCACTGG----------------------- 456
*************************************
consensus_3791#0 TATCGCTTCATTCGTTTCGGCTGCTTTCGTCGCTCGCAGCTCAAACATGGACCCGTTGGG 434
consensus_3791#1 ---------------------------------------CTCAAACATGGACCCGTTGGG 477
*********************
consensus_3791#0 AGGCTGTCTAAATTATCAATTGCTTTCCGCTGCTGGCTCAGCGCATCTGCTCCCTTGTAC 494
consensus_3791#1 AGGCTGTCGAAATTATCAATTGCTATCCG-TGCTGGCTCAGCGCATCTGCTCCCTTGT-C 535
******** *************** **** **************************** *
consensus_3791#0 GTGTGTANGATCAAACATGTGCGGCAAGAGAACATAGCCGGCTGCAGCACTGTCNTNGCG 554
consensus_3791#1 GTGTGTTTGATCAAACATGTGCGGCAAGAGAACATAGCGG--TGCAG-ACTGT-TTTGCG 591
****** ****************************** * ***** ***** * ***
consensus_3791#0 CCAAGCGCTGCTTCCCATGCACCGTGCGTCGACGGAGCTTCCNCGCCNCGGCCAGGCGCA 614
consensus_3791#1 CCAAGCGCTGCTTCCCATGCACCGTGCGTTGACGGAGTTTTTG---TTCGGCCAGGCGCA 648
***************************** ******* ** ************
consensus_3791#0 TTCGTCCCAGCACTTCAGTCCACTTCAGCTGCGCTGACTTCTACACATTACGCTTCTCTC 674
consensus_3791#1 TTCGTCCCAGCACTTCAGTCCACTTCAGCTGCG-TGA-TTCTACACATT-CGCTTCTCTC 705
********************************* *** *********** **********
consensus_3791#0 CTTACCGTCGCACTGCCTCTCTATCCCAACCAACCGATCCCTTCACCAGCCAACCCCTTG 734
consensus_3791#1 CTTACCGTCGA--TGCCTCTCTATCC-AACC----------------------------- 733
********** ************* ****
consensus_3791#0 AACGTANAC 743
consensus_3791#1 ---------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||