cluster # 3804

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Anopheles gambiae
cluster # 3804 cluster # 3804 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3804#0 length = 579 sequences # 1

consensus_3804#1 length = 317 sequences # 2

consensusID : consensus_3804#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGATCCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGAGGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTAGGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTTATCAAAATCGTTCAATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTCGCGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCCTTTAACTGCCATACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCACGTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGCGCACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG]

[+] EMBL BX625115             [TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGATCCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGAGGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTAGGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTTATCAAAATCGTTCAATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTCGCGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCCTTTAACTGCCATACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCACGTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGCGCACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG]




>consensus_3804#0
TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGAT
CCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGA
GGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTA
GGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTTATCAAAATCGTTCA
ATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTCG
CGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCCTTTAACTGCCATA
CACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTGTT
CCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCAC
GTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGCGC
ACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG

consensusID : consensus_3804#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 317
fasta sequence

                              [GCCCCGAATGTAAACACACACACACAACGGGGTAATAGTTTTTTATCAAAATCGTT-CAAT-ATT-GATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCGTGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATACACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCGCCTGCGGACGCGTGGGCGG]

[-] EMBL BM617680             [GCCCCGAATGTAAACACACACACACAACGGGGTAATAGTTTTTTATCAAAATCGTT CAAT ATT GATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCGTGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATACACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCGCCTGCGGACGCGTGGGCGG]
[-] EMBL BM604570             [                CACACACA AACGGGGTAATAG TTTTTATCAAAATCGTTCCCATAATTGGATAACCACAGCAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCGTGTGTATGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAAC      TTCCTGTTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCgg                                 ]




>consensus_3804#1
GCCCCGAATGTAAACACACACACACAACGGGGTAATAGTTTTTTATCAAAATCGTTCAAT
ATTGATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTCGCG
TGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCATAC
ACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTGTTC
CTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTCGCC
TGCGGACGCGTGGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3804#0      TTGTGTATCCAGTTGGAAGTGAGCTACTCGGAGCTACGCTGCGTGAAAGGGCAAGCCGAT 60
consensus_3804#1      ------------------------------------------------------------
                                                                                  

consensus_3804#0      CCGATGATAGCACGAAAACGCGTTTAAAGGCGGTTTAGGTTAAAAACAGGGGGAGAAAGA 120
consensus_3804#1      ------------------------------------------------------------
                                                                                  

consensus_3804#0      GGGTGTTCTACATACAAACAAATATTACAGTATGCCTGTCTGGTTCGATAATTACAACTA 180
consensus_3804#1      ------------------------------------------------------------
                                                                                  

consensus_3804#0      GGCTCAAAAATTTGATATTTTCCCACCCCGAATGATAATAGTTTTT-ATCAAAATCGTTC 239
consensus_3804#1      -GCCCCGAATGTAAACACACACACACAACGG--GGTAATAGTTTTTTATCAAAATCGTTC 57
                       ** *  **  *  * *    * ***  **   * *********** *************

consensus_3804#0      AATATTGATAACCACAACAATACTCACGATCATAGTTAGCACACTGTATTCTCTGTATTC 299
consensus_3804#1      AATATTGATAGCCACAACAATACTCACGATCATAGTTAGCACATTGTATTCTCTGTATTC 117
                      ********** ******************************** ****************

consensus_3804#0      GCGTGTGTTTGTGTGTGACAGCACCTTCATAATACAAATCCTTTCGC-CTTTAACTGCCA 358
consensus_3804#1      GCGTGTGTATATGTGTGACAGCACCTTCATAATACAAATCCTTTCGCGCTTTAGCTGCCA 177
                      ******** * ************************************ ***** ******

consensus_3804#0      TACACAACGGGTATTCTGGTTCGATTTCTAAGCTTTCTTTTACACAACTTCCTGTTCCTG 418
consensus_3804#1      TACACAACGGATATTCTGGTTCGATTTCTAAGCTTTCTTTTACACGACTTCCTGTTCCTG 237
                      ********** ********************************** **************

consensus_3804#0      TTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTC 478
consensus_3804#1      TTCCTGTTCCTTCATACACACTATTATGATGTATTCAATATATTCATATATCTTCTCTTC 297
                      ************************************************************

consensus_3804#0      ACGTGTCTAATAGGAGACAAAATGTGTTCCCCTGCCAAAAAAGGGATATACAAGCACGGC 538
consensus_3804#1      GCCTGCGGACGCGTGGGCGG---------------------------------------- 317
                       * **   *   *  * *                                          

consensus_3804#0      GCACCACGCGTATAATATACCCAAAACATACAAGGGGGGGG 579
consensus_3804#1      -----------------------------------------