cluster # 3808

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Anopheles gambiae
cluster # 3808 cluster # 3808 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3808#0 length = 823 sequences # 2

consensus_3808#1 length = 445 sequences # 1

consensusID : consensus_3808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 823
fasta sequence

                              [CCGCATAACCGATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAAACCATGTGGCTGCGAATCACTTTTGCCGGCTGTTTGTTCCTGCTCGGCGGACTGCTGTCCAGTGCCGATGGGTACAGGATACTGTTTCTTGCCCCCTTTCCCGGTCCGAGCCATTGGCTCATGCTGAAGCACTTTATACGCGAGCTGACCGATCGGCAGCACCAGGTAACGTGCATTACGAGCTTCCCGTACGGTGAACCGCTGCCGAACTACGATGAAGTACTGATCGATCCACCGTACCCGATACGGGAGACATTCCCAGTGGAGGGTTTGTTCGACGCAAGCCAAACGTCGGACTTTGACAAGCTGAACATGTACTGGGACCTTGGCCTCAACACCAGCGAGTACGGGCTGGAGTCGGCGAACGTGCGCCAGTTCATTGCGCGTACCGATCTCACGTTCGATCTCGTCGTCGCCGAGCAGTTTTTCCAGGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGCACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGC-GGACACCGTGGTCGTTCGTGCCGCACATGGTACTGTCCTACACCGACAGCATG-AGCATCGACGAGCGGGCGTACAATTTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGTTACCTTGGGTGTCAAGACAGGATTAGCGTGGGAGTGCGTTTGGCATCAACTTCCTCGGGGACGCGCGTATCCGACCTGGAAAGGTCCCATCTCGGTTATACTGGTCAACAGGCCATTCCG]

[+] EMBL BM613449             [CCGCATAACCGATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAAACCATGTGGCTGCGAATCACTTTTGCCGGCTGTTTGTTCCTGCTCGGCGGACTGCTGTCCAGTGCCGATGGGTACAGGATACTGTTTCTTGCCCCCTTTCCCGGTCCGAGCCATTGGCTCATGCTGAAGCACTTTATACGCGAGCTGACCGATCGGCAGCACCAGGTAACGTGCATTACGAGCTTCCCGTACGGTGAACCGCTGCCGAACTACGATGAAGTACTGATCGATCCACCGTACCCGATACGGGAGACATTCCCAGTGGAGGGTTTGTTCGACGCAAGCCAAACGTCGGACTTTGACAAGCTGAACATGTACTGGGACCTTGGCCTCAACACCAGCGAGTACGGGCTGGAGTCGGCGAACGTGCGCCAGTTCATTGCGCGTACCGATCTCACGTTCGATCTCGTCGTCGCCGAGCAGTTTTTCCAGGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGCACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGC GGACACCGTGGTCGTTCGTGCCGCACATGGTACTGTCCTACACCGACAGCATG AGCATCGACGAGCGGGCGTACAATTTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTG                                                                                                                          ]
[+] EMBL BM607341             [                                                                                                                                                                                                                                                                                   ccgGATCGATCCACCGTACCCGATACGGGAGACATTCCCAGTGGAGGGTTTGTTCGACGCAAGCCAAACGTCGGACTTTGACAAGCTGAACATGTACTGGGACCTGGGCCTCAACACCAGCGAGTACGGGCTGGAGTCGGCGAACGTGCGCCAGTTCATTGCGCGTACCGATCTCACGTTCGATCTCGTCGTCGCCGAGCAGTTTTTCCAGGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGCACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGCGGGACACCGTGGTCGTTCGTGCCGCACATGGTACTGTCCTACACCGACAGCATGCAGCATCGACGAGCGGGCGTACAACTTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGTTACCTTGGGTGTCAAGACAGGATTAGCGTGGGAGTGCGTTTGGCATCAACTTCCTCGGGGACGCGCGTATCCGACCTGGAAAGGTCCCATCTCGGTTATACTGGTCAACAGGCCATTCCG]




>consensus_3808#0
CCGCATAACCGATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAAACCATG
TGGCTGCGAATCACTTTTGCCGGCTGTTTGTTCCTGCTCGGCGGACTGCTGTCCAGTGCC
GATGGGTACAGGATACTGTTTCTTGCCCCCTTTCCCGGTCCGAGCCATTGGCTCATGCTG
AAGCACTTTATACGCGAGCTGACCGATCGGCAGCACCAGGTAACGTGCATTACGAGCTTC
CCGTACGGTGAACCGCTGCCGAACTACGATGAAGTACTGATCGATCCACCGTACCCGATA
CGGGAGACATTCCCAGTGGAGGGTTTGTTCGACGCAAGCCAAACGTCGGACTTTGACAAG
CTGAACATGTACTGGGACCTTGGCCTCAACACCAGCGAGTACGGGCTGGAGTCGGCGAAC
GTGCGCCAGTTCATTGCGCGTACCGATCTCACGTTCGATCTCGTCGTCGCCGAGCAGTTT
TTCCAGGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGC
ACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGCGGACACCGTGGTCGTTC
GTGCCGCACATGGTACTGTCCTACACCGACAGCATGAGCATCGACGAGCGGGCGTACAAT
TTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGTTACCTTGGGTGTCAAGA
CAGGATTAGCGTGGGAGTGCGTTTGGCATCAACTTCCTCGGGGACGCGCGTATCCGACCT
GGAAAGGTCCCATCTCGGTTATACTGGTCAACAGGCCATTCCG

consensusID : consensus_3808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [CCCGAGGTNNATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAACCATGTGGCTGCGAATCACTTTTGCCGGCAGTTTTTCCAAGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGCACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGCGGACACCGTGGTCGTTCGTGCCGCACATGGTACTGTCCTACACCGACAGCATGAGCATCGACGAGCGGGCCTACAACTTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGTACCTTGGGTGTCAAGACAGGATAGCGTGGAGTGCGTTTGGCATCAACTTCCTCGGGACGCGCGTATCCGACCTGGAACAGTCCATCTCGGTCATACTGGTCAACAGCCATCCGGTGTTGAGCAACCCGCGGCCAC]

[+] EMBL AL694337             [CCCGAGGTNNATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAACCATGTGGCTGCGAATCACTTTTGCCGGCAGTTTTTCCAAGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGCACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGCGGACACCGTGGTCGTTCGTGCCGCACATGGTACTGTCCTACACCGACAGCATGAGCATCGACGAGCGGGCCTACAACTTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGTACCTTGGGTGTCAAGACAGGATAGCGTGGAGTGCGTTTGGCATCAACTTCCTCGGGACGCGCGTATCCGACCTGGAACAGTCCATCTCGGTCATACTGGTCAACAGCCATCCGGTGTTGAGCAACCCGCGGCCAC]




>consensus_3808#1
CCCGAGGTNNATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAACCATGTG
GCTGCGAATCACTTTTGCCGGCAGTTTTTCCAAGAAAGTTGGCTCATGTTTGCGAACAAG
TACAGTGCACCGATCGTGACCATCAGCACGTACGGCTATTCGGACTTTTTCGACCAGATC
ATGGGCCTGCGGACACCGTGGTCGTTCGTGCCGCACATGGTACTGTCCTACACCGACAGC
ATGAGCATCGACGAGCGGGCCTACAACTTTGCGCTCTCGCTGTACGATCGCTTTTGGCGC
TACTGGTGGTACCTTGGGTGTCAAGACAGGATAGCGTGGAGTGCGTTTGGCATCAACTTC
CTCGGGACGCGCGTATCCGACCTGGAACAGTCCATCTCGGTCATACTGGTCAACAGCCAT
CCGGTGTTGAGCAACCCGCGGCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3808#0      CCGCATAACCGATCGATAGTTTAGCTGCTGCTCTGGAGGCAGCGACAGAGTCAAACCATG 60
consensus_3808#1      ------------------------------------------------------------
                                                                                  

consensus_3808#0      TGGCTGCGAATCACTTTTGCCGGCTGTTTGTTCCTGCTCGGCGGACTGCTGTCCAGTGCC 120
consensus_3808#1      ------------------------------------------------------------
                                                                                  

consensus_3808#0      GATGGGTACAGGATACTGTTTCTTGCCCCCTTTCCCGGTCCGAGCCATTGGCTCATGCTG 180
consensus_3808#1      ------------------------------------------------------------
                                                                                  

consensus_3808#0      AAGCACTTTATACGCGAGCTGACCGATCGGCAGCACCAGGTAACGTGCATTACGAGCTTC 240
consensus_3808#1      ------------------------------------------------------------
                                                                                  

consensus_3808#0      CCGTACGGTGAACCGCTGCCGAACTACGATGAAGTACTGATCGATCCACCGTACCCGATA 300
consensus_3808#1      ------------------------------------------------------------
                                                                                  

consensus_3808#0      CGGGAGACATTCCCAGTGGAGGGTTTGTTCGACGCAAGCCAAACGTCGGACTTTGACAAG 360
consensus_3808#1      ------------------------------------------------------------
                                                                                  

consensus_3808#0      CTGAACATGTACTGGGACCTTGGCCTCAACACCAGCGAGTACGGGCTGGAGTCGGCGAAC 420
consensus_3808#1      ------------------------CCCGAGGTNNATCGATAG----TTTAGCTGCTGCTC 32
                                              * * *          **     *  **  *  *  *

consensus_3808#0      GTGCGCCAGTTCATTGCGCGTACCGATCTCACGTTCGATCTCGTCGTCGCCGAGCAGTTT 480
consensus_3808#1      TGGAGGCAGCG-ACAGAGTCAACC-ATGTGGCTGCGAATCACTT--TTGCCG-GCAGTTT 87
                        * * ***   *  * *   *** ** *  *     *** * *  * **** *******

consensus_3808#0      TTCCAGGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGC 540
consensus_3808#1      TTCCAAGAAAGTTGGCTCATGTTTGCGAACAAGTACAGTGCACCGATCGTGACCATCAGC 147
                      ***** ******************************************************

consensus_3808#0      ACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGCGGACACCGTGGTCGTTC 600
consensus_3808#1      ACGTACGGCTATTCGGACTTTTTCGACCAGATCATGGGCCTGCGGACACCGTGGTCGTTC 207
                      ************************************************************

consensus_3808#0      GTGCCGCACATGGTACTGTCCTACACCGACAGCATGAGCATCGACGAGCGGGCGTACAAT 660
consensus_3808#1      GTGCCGCACATGGTACTGTCCTACACCGACAGCATGAGCATCGACGAGCGGGCCTACAAC 267
                      ***************************************************** ***** 

consensus_3808#0      TTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGTTACCTTGGGTGTCAAGA 720
consensus_3808#1      TTTGCGCTCTCGCTGTACGATCGCTTTTGGCGCTACTGGTGGT-ACCTTGGGTGTCAAGA 326
                      ******************************************* ****************

consensus_3808#0      CAGGATTAGCGTGGGAGTGCGTTTGGCATCAACTTCCTCGGGGACGCGCGTATCCGACCT 780
consensus_3808#1      CAGGAT-AGCGTGG-AGTGCGTTTGGCATCAACTTCCTCGGG-ACGCGCGTATCCGACCT 383
                      ****** ******* *************************** *****************

consensus_3808#0      GGAAAGGTCCCATCTCGGTTATACTGGTCAACAGGCCATTCCG----------------- 823
consensus_3808#1      GGAACAGTCC-ATCTCGGTCATACTGGTCAACAG-CCATCCGGTGTTGAGCAACCCGCGG 441
                      ****  **** ******** ************** **** * *                 

consensus_3808#0      ----
consensus_3808#1      CCAC 445