cluster # 3809

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Anopheles gambiae
cluster # 3809 cluster # 3809 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3809#0 length = 623 sequences # 1

consensus_3809#1 length = 525 sequences # 1
consensus_3809#2 length = 445 sequences # 1

consensusID : consensus_3809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGCGGACGCGTGGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGCGTAGCCCCAGGTGTACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAGCACAACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGTGCTGGTCACGTTCGAGTCGGCGGCCGAGTTTATCGAG]

[+] EMBL BM604427             [CCGCGGACGCGTGGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGCGTAGCCCCAGGTGTACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAGCACAACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGTGCTGGTCACGTTCGAGTCGGCGGCCGAGTTTATCGAG]




>consensus_3809#0
CCGCGGACGCGTGGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGCGTAGCCCCAGGTG
TACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTCGAAAAATATGCACG
GCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCA
TTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGT
CGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGC
AGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACC
GCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGG
GCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCT
CCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAGCACA
ACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGTGCTGGTCACGTTCG
AGTCGGCGGCCGAGTTTATCGAG

consensusID : consensus_3809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [CCGCGGACGCGTGGGTTAAAAAAATAGTGTCGATAGCGAGAGAGAAAGGGAAAAAAGTCACTTCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAG]

[+] EMBL BM654529             [CCGCGGACGCGTGGGTTAAAAAAATAGTGTCGATAGCGAGAGAGAAAGGGAAAAAAGTCACTTCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAG]




>consensus_3809#1
CCGCGGACGCGTGGGTTAAAAAAATAGTGTCGATAGCGAGAGAGAAAGGGAAAAAAGTCA
CTTCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGG
GTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCCGGCCTCGCTCATCATTCTCCCACTC
TACCTGCGCCACACGGTGTTTGCGGACGTGGTCTATCCGATCGCCGAGTCGGACATTATC
GAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGC
ACGTTCAACGCGTTCCAGCTCGACCACGAACCGGAAGTGTCGAAGAACCGCAAGCACATA
CGGTTGAAAAAGTCCATGTCCCTGCCGGACGATACGCTCGAGTACTGGGGCTTCTATCTG
CTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTCCCGGTACGACGGCTCCCGCATACTG
GTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGGGCTGCTCGAG

consensusID : consensus_3809#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGACCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATAAATCCCCATCCCAGTGTCGTGTAAAGGAATCTATAATTTAAAAAAATAGTGTCGATAGCTTAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCCGGCTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCAC]

[+] EMBL BM642561             [GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGACCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATAAATCCCCATCCCAGTGTCGTGTAAAGGAATCTATAATTTAAAAAAATAGTGTCGATAGCTTAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGCACAACGATGCATGAATTCGAGTCGAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCCGGCTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTATCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGAAGCACACGCTGCAGATGAACAGCAC]




>consensus_3809#2
GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGA
CCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATA
AATCCCCATCCCAGTGTCGTGTAAAGGAATCTATAATTTAAAAAAATAGTGTCGATAGCT
TAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGCACAACGATGCATGAATTCGAGTCGA
AAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCCGG
CTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTATC
CGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCAGA
AGCACACGCTGCAGATGAACAGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3809#0      ------------------------------------------------------------
consensus_3809#1      ------------------------------------------------------------
consensus_3809#2      GTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGGCAAGTACGCGCGTTACGCGA 60
                                                                                  

consensus_3809#0      ------------------------------------------------------------
consensus_3809#1      ------------------------------------------------------------
consensus_3809#2      CCAGAGGGAAGAATTTCCTAAGCCTTGCAATTGCAGTGCAGTGAATTATTCCAGTCAATA 120
                                                                                  

consensus_3809#0      ----------CCGCGGACGCGT---GGGCTCGGCGTAGCAGAAGGAGTGCAACCCCCGGC 47
consensus_3809#1      ----------CCGCGGACGCGT---GGGTT----------AAAAAAATAGTGTCGATAGC 37
consensus_3809#2      AATCCCCATCCCAGTGTCGTGTAAAGGAATCTATA-ATTTAAAAAAATAGTGTCGATAGC 179
                                **   * ** **   **  *           **  * *     *    **

consensus_3809#0      GTAG-CCCCAGGTGTACGTGCGTGTTACGCTACCGCTGTTGCTGCGTATTGTTCGGAGTC 106
consensus_3809#1      GAGA-GAGAAAGGGAAAAAAGTCACTTCACAACTGC-ACAACGATGCATGAATTCGAGTC 95
consensus_3809#2      TTAGAGAGAAAGGGAAAAAAGTCACTCCACAACTGC-ACAACGATGCATGAATTCGAGTC 238
                               * * * *         * * * ** **     *   * **   *  *****

consensus_3809#0      GAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCC 166
consensus_3809#1      GAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACCGCCGTCCTGCC 155
consensus_3809#2      GAAAAATATGCACGGCGTCAAGCGGGTGATTGCCTTCTGCATCCTGACTGCCGTCCTGCC 298
                      ************************************************ ***********

consensus_3809#0      GGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTA 226
consensus_3809#1      GGCCTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCGGACGTGGTCTA 215
consensus_3809#2      GGCTTCGCTCATCATTCTCCCACTCTACCTGCGCCACACGGTGTTTGCAGACGTGGTCTA 358
                      *** ******************************************** ***********

consensus_3809#0      TCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCA 286
consensus_3809#1      TCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCA 275
consensus_3809#2      TCCGATCGCCGAGTCGGACATTATCGAAATCCGCGATGGCATCTCGTCCGTGTTCTGCCA 418
                      ************************************************************

consensus_3809#0      GAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGA 346
consensus_3809#1      GAAGCACACGCTGCAGATGAACAGCACGTTCAACGCGTTCCAGCTCGACCACGAACCGGA 335
consensus_3809#2      GAAGCACACGCTGCAGATGAACAGCAC--------------------------------- 445
                      ***************************                                 

consensus_3809#0      AGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATAC 406
consensus_3809#1      AGTGTCGAAGAACCGCAAGCACATACGGTTGAAAAAGTCCATGTCCCTGCCGGACGATAC 395
consensus_3809#2      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTC 466
consensus_3809#1      GCTCGAGTACTGGGGCTTCTATCTGCTGAAGGGGGCGACTGTTGCGCTGAAGGTTTGCTC 455
consensus_3809#2      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGG 526
consensus_3809#1      CCGGTACGACGGCTCCCGCATACTGGTTGTGAAGGGTGAACGCAATCTGCGGACCTGCGG 515
consensus_3809#2      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GCTGCTCGAGCACAACAACAACAAGATCGATAACTACCTCAACAAGGAACACGGGCAGGT 586
consensus_3809#1      GCTGCTCGAG-------------------------------------------------- 525
consensus_3809#2      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GCTGGTCACGTTCGAGTCGGCGGCCGAGTTTATCGAG 623
consensus_3809#1      -------------------------------------
consensus_3809#2      -------------------------------------