cluster # 3813

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Anopheles gambiae
cluster # 3813 cluster # 3813 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3813#0 length = 504 sequences # 1

consensus_3813#1 length = 500 sequences # 1
consensus_3813#2 length = 378 sequences # 1

consensusID : consensus_3813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [CCGCGGACGCGTGGGCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAAAGCCCTCGAACGGCTCGCTCGGTG]

[+] EMBL BM655990             [CCGCGGACGCGTGGGCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAAAGCCCTCGAACGGCTCGCTCGGTG]




>consensus_3813#0
CCGCGGACGCGTGGGCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGT
GGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCG
CCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACG
TCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACAC
GCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGT
TCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGG
ACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGG
CACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAA
AGCCCTCGAACGGCTCGCTCGGTG

consensusID : consensus_3813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTT]

[+] EMBL BM582474             [CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAAACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGCGCGAGATTTGCGACAAATTT]




>consensus_3813#1
CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAA
ACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT
AGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT
CCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC
TCCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGG
CAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGT
CGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGT
ACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGTGC
GCGAGATTTGCGACAAATTT

consensusID : consensus_3813#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGA]

[+] EMBL BM603236             [CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCTAGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGTCCGCTGGTTGCCCCCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTCTGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTGTCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGTGTACGA]




>consensus_3813#2
CCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCG
CGATACCGCATCTAGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGA
CAGAGAGAGCTGTCCGCTGGTTGCCCCCGTGTGATCCGTCCGACGTCCCACGACACCCTC
CGGCACACTTTCTGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCA
AGCGCGATGTCGGCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGAT
GGCGAGCTGCTGTCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAA
CGGCGAGGAAGTGTACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3813#0      -------------------------CCGCGGACGCGTGGG--------CGACAGGGAAAA 27
consensus_3813#1      CCGGGGACCGCGATTGGTGCGGCTGTCATCGGCGCAGGAGGAATCACCCGACAGGGAAAA 60
consensus_3813#2      -----------------------------------------------CCCACGCGTCCGC 13
                                                                      * **  *     

consensus_3813#0      ACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT 87
consensus_3813#1      ACAAAGCACTTTTCACCAAATCCTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT 120
consensus_3813#2      CCACGCGTCCGCCCACGCGTCCGTTCCACGAGTGGTGCATTCCATCGCGATACCGCATCT 73
                       **     *    ***     * *************************************

consensus_3813#0      AGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT 147
consensus_3813#1      AGCCGGCGAACAGAAGCGTCTTCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT 180
consensus_3813#2      AGCCGGCGAACAGAAGCGTCTCCCAGCTCTCCGCCATCGTCCTCGGACAGAGAGAGCTGT 133
                      ********************* **************************************

consensus_3813#0      CCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC 207
consensus_3813#1      CCGCTGGTTGCCCCTCGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC 240
consensus_3813#2      CCGCTGGTTGCCCC-CGTGTGATCCGTCCGACGTCCCACGACACCCTCCGGCACACTTTC 192
                      ************** *********************************************

consensus_3813#0      T-CCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCG 266
consensus_3813#1      T-CCTGGTGGTCAGTGCTTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCG 299
consensus_3813#2      TGCCTGGTGGTCAGTGCCTGCCAACGAAGCACACGCCATCACCAGCCAAGCGCGATGTCG 252
                      * *************** ******************************************

consensus_3813#0      GCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTG 326
consensus_3813#1      GCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTG 359
consensus_3813#2      GCAGCAGCGTGTACGGCCGTGCTGAAGCGAGAGTTCCCGTCGATCGATGGCGAGCTGCTG 312
                      ************************************************************

consensus_3813#0      TC-GTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGT 385
consensus_3813#1      TC-GTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGT 418
consensus_3813#2      TCCGTACGTGGAAACCGTCCTGCAGAGCAGCGCGGACGAGTTCGAGAACGGCGAGGAAGT 372
                      ** *********************************************************

consensus_3813#0      GTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGT 445
consensus_3813#1      GTACGAAGCGGTCGGCGAGATACTGCACGAGGTGGCACAGGACAAGTCCGAGGACGATGT 478
consensus_3813#2      GTACGA------------------------------------------------------ 378
                      ******                                                      

consensus_3813#0      GCGCGAGATTTGCGACAAATTTCTGCGGCTGCTAAAGCCCTCGAACGGCTCGCTCGGTG 504
consensus_3813#1      GCGCGAGATTTGCGACAAATTT------------------------------------- 500
consensus_3813#2      -----------------------------------------------------------