cluster # 3825

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Anopheles gambiae
cluster # 3825 cluster # 3825 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3825#0 length = 652 sequences # 2

consensus_3825#1 length = 545 sequences # 1

consensusID : consensus_3825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 652
fasta sequence

                              [CCGCCGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGGTGGGGAGTTTAGACAAACCCTTCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGCATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGGGCGCGTGCTATAAAGTGATTCTGAAGTGATTCGAAGCATCTCGGCGCGATCGTCTGTGCAAAGCTGGAGAGATGCTTATCGATTTTTATGTGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACCCGGTTGTTCTCACAGGCTCATGTTCTACAGCACGATCCGCAAGCGATTTTAACATCGACTAGTCTCCAGCTCAACGCCAACAATCGATTATAGGTGCTCTCGTATTAATTAGTGATCAGCCTACTGCACTGTTTCTCTTCGCGACTCTCACTTTACAAGTGCTGTGTG--TGTGCGTGCGTGTGTGTGTGTGTGTTAAATGCTTTCCAACAGTAAGTTTTGTTAAAGGTGACTGAGAAATGATTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCATTAAGTTATTAAAGCAAGCGACGAACAGGAAATAGGTTTCGGGTATCAACTAC]

[+] EMBL BM623848             [CCGCCGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGGTGGGGAGTTTAGACAAACCCTTCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGCATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGGGCGCGTGCTATAAAGTGATTCTGAAGTGATTCGAAGCATCTCGGCGCGATCGTCTGTGCAAAGCTGGAGAGATGCTTATCGATTTTTATGTGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACCCGGTTGTTCTCACAGGCTCATGTTCTACAGCACGATCCGCAAGCGATTTTAACATCGACTAGTCTCCAGCTCAACGCCAACAATCGATTATAGGTGCTCTCGTATTAATTAGTGATCAGCCTACTGCACTGTTTCTCTTCGCGACTCTCACTTTACAAGTGCTGTGTG  TGTGCGTGCGTGTGTGTGTGTGTGTTAAATGCTTTCCAACAGTAAGTTTTGTTAAAGGTGACTGAGAAATGATTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCATTAAGTTATTAAAGCAAGCGACGAACAGGAAATAGGTTTCGGGTATCAACTAC]
[+] EMBL BM604004             [        ccgCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGGTGGGGAGTTTAGACAAACCCATCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGCATTTGCAAACGACCGTCTTATCGAGCAAAAGTGTATGTGTGAGTGTGCGCGCGTGCAATAAAGTGATTCTGAAGTGATTGGAAGCATCTCAGCGCGATCGTCTGTGCAAAGCTGGAGAGATGCTTATCGATTTTTATGTGCAATAGAAGTGCAATAAACACGCAGCTGCAGTTTTTGACCCGGTTGTTCTCACAGGCTCATGTTCTACAGCACGATCCGCAAGCGATTTTAACATCAACTAGTCTCCAGCTCAACGCCAACAATCGATTATAGGTGCTCTCGTATTAATTAGTGATCAGCCTACTGCACTGTTTCCCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTATGTGCGTGCGTGTGTGTGTG                                                                                                                                                                    ]




>consensus_3825#0
CCGCCGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGG
TGGGGAGTTTAGACAAACCCTTCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGC
ATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGGGCGCGTGCTATA
AAGTGATTCTGAAGTGATTCGAAGCATCTCGGCGCGATCGTCTGTGCAAAGCTGGAGAGA
TGCTTATCGATTTTTATGTGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACC
CGGTTGTTCTCACAGGCTCATGTTCTACAGCACGATCCGCAAGCGATTTTAACATCGACT
AGTCTCCAGCTCAACGCCAACAATCGATTATAGGTGCTCTCGTATTAATTAGTGATCAGC
CTACTGCACTGTTTCTCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTGTGCGTGCGTG
TGTGTGTGTGTGTTAAATGCTTTCCAACAGTAAGTTTTGTTAAAGGTGACTGAGAAATGA
TTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCAT
TAAGTTATTAAAGCAAGCGACGAACAGGAAATAGGTTTCGGGTATCAACTAC

consensusID : consensus_3825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [CCGGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGGTGGGGAGTTTAGACAAACCCATCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGCATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGCGCGCGTGCTATAAAGTGATTCTGAAGTGATTGGAAGCATCTCAGCGCGATCGTCTGTGCAAAGCTGGAGAGATGCTTATCGATTTTTATGGGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACCCGTGATCAGCCTACTGCACTGTTTCCCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTATGTGCGTGCGTGTGTGTGTGTGTTAAATGCTTTCCAGCAGTAAGTTTTGTTAAAGGTGACTGAGAAATGATTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCATTAAGTTATTAAAGCAAGCGACGAACAGGAAATAGCTTTCGGGTGTCAACTACCAGGT]

[+] EMBL BM642384             [CCGGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGGTGGGGAGTTTAGACAAACCCATCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGCATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGCGCGCGTGCTATAAAGTGATTCTGAAGTGATTGGAAGCATCTCAGCGCGATCGTCTGTGCAAAGCTGGAGAGATGCTTATCGATTTTTATGGGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACCCGTGATCAGCCTACTGCACTGTTTCCCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTATGTGCGTGCGTGTGTGTGTGTGTTAAATGCTTTCCAGCAGTAAGTTTTGTTAAAGGTGACTGAGAAATGATTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCATTAAGTTATTAAAGCAAGCGACGAACAGGAAATAGCTTTCGGGTGTCAACTACCAGGT]




>consensus_3825#1
CCGGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGGTG
GGGAGTTTAGACAAACCCATCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGCAT
TTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGCGCGCGTGCTATAAA
GTGATTCTGAAGTGATTGGAAGCATCTCAGCGCGATCGTCTGTGCAAAGCTGGAGAGATG
CTTATCGATTTTTATGGGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACCCG
TGATCAGCCTACTGCACTGTTTCCCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTATG
TGCGTGCGTGTGTGTGTGTGTTAAATGCTTTCCAGCAGTAAGTTTTGTTAAAGGTGACTG
AGAAATGATTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGA
CTTCGCATTAAGTTATTAAAGCAAGCGACGAACAGGAAATAGCTTTCGGGTGTCAACTAC
CAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3825#0      CCGCCGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGG 60
consensus_3825#1      --CCGGTTGCCCACTGCGCACCGCACACGGTGCGGCTGACAAGACCAGACCAGACGACGG 58
                         * *******************************************************

consensus_3825#0      TGGGGAGTTTAGACAAACCCTTCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGC 120
consensus_3825#1      TGGGGAGTTTAGACAAACCCATCTTTGCTCGGTGTTCGGACGGGACGGAGATGCACATGC 118
                      ******************** ***************************************

consensus_3825#0      ATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGGGCGCGTGCTATA 180
consensus_3825#1      ATTTGCAAACGAGCATCTTATCGAGCAAAAGTGTATGTGTGAGTGTGCGCGCGTGCTATA 178
                      *********************************************** ************

consensus_3825#0      AAGTGATTCTGAAGTGATTCGAAGCATCTCGGCGCGATCGTCTGTGCAAAGCTGGAGAGA 240
consensus_3825#1      AAGTGATTCTGAAGTGATTGGAAGCATCTCAGCGCGATCGTCTGTGCAAAGCTGGAGAGA 238
                      ******************* ********** *****************************

consensus_3825#0      TGCTTATCGATTTTTATGTGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACC 300
consensus_3825#1      TGCTTATCGATTTTTATGGGCAATAGAAGTGCAATAAACACGCAGCTGCAGCTTTTGACC 298
                      ****************** *****************************************

consensus_3825#0      CGGTTGTTCTCACAGGCTCATGTTCTACAGCACGATCCGCAAGCGATTTTAACATCGACT 360
consensus_3825#1      CG---------------------------------------------------------- 300
                      **                                                          

consensus_3825#0      AGTCTCCAGCTCAACGCCAACAATCGATTATAGGTGCTCTCGTATTAATTAGTGATCAGC 420
consensus_3825#1      ----------------------------------------------------TGATCAGC 308
                                                                          ********

consensus_3825#0      CTACTGCACTGTTTCTCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTGTGCGTGCGTG 480
consensus_3825#1      CTACTGCACTGTTTCCCTTCGCGACTCTCACTTTACAAGTGCTGTGTGTATGTGCGTGCG 368
                      *************** ********************************* ** * * * *

consensus_3825#0      TGTGTGTGTGTGTTAAATGCTTTCCAACAGTAAGTTTTGTTAAAGGTGACTGAGAAATGA 540
consensus_3825#1      TGTGTGTGTGTGTTAAATGCTTTCCAGCAGTAAGTTTTGTTAAAGGTGACTGAGAAATGA 428
                      ************************** *********************************

consensus_3825#0      TTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCAT 600
consensus_3825#1      TTGTTATTAATTGGCCAGCCAAGTGGTGAATTCGTTTGGTTGCACACAACGACTTCGCAT 488
                      ************************************************************

consensus_3825#0      TAAGTTATTAAAGCAAGCGACGAACAGGAAATAGGTTTCGGGTATCAACTAC----- 652
consensus_3825#1      TAAGTTATTAAAGCAAGCGACGAACAGGAAATAGCTTTCGGGTGTCAACTACCAGGT 545
                      ********************************** ******** ********